File Changes for katrina

v268_preview2 to v268_base (2012-05-29 to 2012-06-05) v268

• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeReg.ra
  • lines changed 99, context: html, text, full: html, text
    preparing for release of Release 2 of the Txn Factor ChIP track, redmine #7462
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeReg.ra
  • lines changed 99, context: html, text, full: html, text
    preparing for release of Release 2 of the Txn Factor ChIP track, redmine #7462
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 3, context: html, text, full: html, text
    preparing for release of Release 2 of the Txn Factor ChIP track, redmine #7462
  • lines changed 2, context: html, text, full: html, text
    releasing release 2 of the Txn Factor ChIP track, redmine #7462
  • lines changed 2, context: html, text, full: html, text
    fixing raw signal labels (#383), fixing tags that start with a numeral, e.g. 1K562 to t1K562 (#6813)
  • lines changed 2, context: html, text, full: html, text
    Matt's fix to tags starting with numbers, redmine #6813, and HepG2 label was fixed to be labeled correctly as a Tier2, P in Prostate was made lowercase, space at the end of the shortLabels was removed
  • lines changed 1, context: html, text, full: html, text
    I left in the .patch.ra instead of copying the .patch.ra over the .ra and leaving in the include for the .ra instead
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra
  • lines changed 29, context: html, text, full: html, text
    Matt's fix to tags starting with numbers, redmine #6813, and HepG2 label was fixed to be labeled correctly as a Tier2, P in Prostate was made lowercase, space at the end of the shortLabels was removed
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra
  • lines changed 733, context: html, text, full: html, text
    Matt's fix to tags starting with numbers, redmine #6813
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra
  • lines changed 549, context: html, text, full: html, text
    Matt's fix to tags starting with numbers, redmine #6813
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.ra
  • lines changed 154, context: html, text, full: html, text
    Matt's fix to tags starting with numbers, redmine #6813, and promote cells to tier2 and better alphabetizing, redmine #3584
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.release2.ra
  • lines changed 6, context: html, text, full: html, text
    Matt's fix to tags starting with numbers, redmine #6813
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.release2.ra
  • lines changed 1, context: html, text, full: html, text
    adding html line to wgEncodeRegTfbsClusteredV2 stanza because with V2, it no longer has the same name as the html file and therefore needs the html line in the trackDb entry, redmine #7462
  • lines changed 1, context: html, text, full: html, text
    making a new release2.html so i can add release notes section for TFBS Clustered, redmine #7462
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.release3.ra
  • lines changed 1, context: html, text, full: html, text
    adding html line to TFBS Clustered V2 so that the description will be displayed (already made the change in release2.ra), redmine #7462
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClustered.release2.html
  • lines changed 64, context: html, text, full: html, text
    making a new release2.html so i can add release notes section for TFBS Clustered, redmine #7462
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra
  • lines changed 3, context: html, text, full: html, text
    Matt's fix to tags starting with numbers, redmine #6813
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.patch.ra
  • lines changed 13, context: html, text, full: html, text
    fixing raw signal labels (#383), fixing tags that start with a numeral, e.g. 1K562 to t1K562 (#6813)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.ra
  • lines changed 19, context: html, text, full: html, text
    I left in the .patch.ra instead of copying the .patch.ra over the .ra and leaving in the include for the .ra instead
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra
  • lines changed 8, context: html, text, full: html, text
    Matt's fix to tags starting with numbers, redmine #6813
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.release2.ra
  • lines changed 12, context: html, text, full: html, text
    Matt's fix to tags starting with numbers, redmine #6813
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.release1.ra
  • lines changed 13, context: html, text, full: html, text
    Matt's fix to tags starting with numbers, redmine #6813