Commits for katrina

v268_preview2 to v268_base (2012-05-29 to 2012-06-05) v268

• adding html line to wgEncodeRegTfbsClusteredV2 stanza because with V2, it no longer has the same name as the html file and therefore needs the html line in the trackDb entry, redmine #7462
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.release2.ra - lines changed 1, context: html, text, full: html, text
• making a new release2.html so i can add release notes section for TFBS Clustered, redmine #7462
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.release2.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClustered.release2.html - lines changed 64, context: html, text, full: html, text
• adding html line to TFBS Clustered V2 so that the description will be displayed (already made the change in release2.ra), redmine #7462
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.release3.ra - lines changed 1, context: html, text, full: html, text
• preparing for release of Release 2 of the Txn Factor ChIP track, redmine #7462
  • src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeReg.ra - lines changed 99, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeReg.ra - lines changed 99, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
• releasing release 2 of the Txn Factor ChIP track, redmine #7462
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
• fixing raw signal labels (#383), fixing tags that start with a numeral, e.g. 1K562 to t1K562 (#6813)
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.patch.ra - lines changed 13, context: html, text, full: html, text
• Matt's fix to tags starting with numbers, redmine #6813
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.release2.ra - lines changed 6, context: html, text, full: html, text
• Matt's fix to tags starting with numbers, redmine #6813, and HepG2 label was fixed to be labeled correctly as a Tier2, P in Prostate was made lowercase, space at the end of the shortLabels was removed
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 29, context: html, text, full: html, text
• I left in the .patch.ra instead of copying the .patch.ra over the .ra and leaving in the include for the .ra instead
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.ra - lines changed 19, context: html, text, full: html, text
• Matt's fix to tags starting with numbers, redmine #6813, and promote cells to tier2 and better alphabetizing, redmine #3584
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.ra - lines changed 154, context: html, text, full: html, text
• Matt's fix to tags starting with numbers, redmine #6813
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.release2.ra - lines changed 12, context: html, text, full: html, text
• Matt's fix to tags starting with numbers, redmine #6813
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.release1.ra - lines changed 13, context: html, text, full: html, text
• Matt's fix to tags starting with numbers, redmine #6813
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra - lines changed 733, context: html, text, full: html, text
• Matt's fix to tags starting with numbers, redmine #6813
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra - lines changed 549, context: html, text, full: html, text
• Matt's fix to tags starting with numbers, redmine #6813
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 3, context: html, text, full: html, text