File Changes for markd

v267_base to v268_preview (2012-05-15 to 2012-05-22) v268

• src/hg/inc/encode/wgEncodeGencodePdb.h
  • lines changed 1, context: html, text, full: html, text
    fixed typo in table description
• src/hg/lib/encode/wgEncodeGencodeExonSupport.sql
  • lines changed 1, context: html, text, full: html, text
    make index non-unique
• src/hg/lib/encode/wgEncodeGencodePdb.as
  • lines changed 1, context: html, text, full: html, text
    fixed typo in table description
• src/hg/lib/encode/wgEncodeGencodePdb.sql
  • lines changed 1, context: html, text, full: html, text
    fixed typo in table description
• src/hg/lib/itemDetailsHtml.sql
  • lines changed 1, context: html, text, full: html, text
    allow multiple entries for an given item name
• src/hg/makeDb/doc/encodeDccHg19/gencodeV12.txt
  • lines changed 56, context: html, text, full: html, text
    load of GENCODE V12
  • lines changed 21, context: html, text, full: html, text
    load of GENCODE V12
• src/hg/makeDb/genbank/doc/initial-load.html
  • lines changed 6, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/etc/align-genbank
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/etc/build-genbank
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/etc/build.crontab
  • lines changed 19, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/etc/ccds-import
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/etc/hgdownload-copy
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/etc/hgnfs1-copy
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/etc/hgwdev-dbload
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/etc/hgwdev.crontab
  • lines changed 16, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/etc/mkdownload
  • lines changed 2, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/makefile
  • lines changed 2, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/src/align/gbAlignSetup
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
  • lines changed 1, context: html, text, full: html, text
    work around #! file path size limit
• src/hg/makeDb/genbank/src/align/gbAlignStep
  • lines changed 1, context: html, text, full: html, text
    removed outdate /cluster/genbank reference
• src/hg/makeDb/genbank/src/align/gbPython
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/src/ccds/README
  • lines changed 3, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/src/extFileUpdate/extFileTool
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/src/lib/py/genbank/GbIndex.py
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/src/process/gbMkOrganismList
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
  • lines changed 1, context: html, text, full: html, text
    work around #! file path size limit
• src/hg/makeDb/genbank/src/repair/extFileFindLost
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/src/repair/repairMgcOrfeome
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
  • lines changed 1, context: html, text, full: html, text
    work around #! file path size limit
• src/hg/makeDb/genbank/tests/tools/getTblOverhead
  • lines changed 3, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/tests/tools/modifyTablesTemplate
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/tests/tools/optimizeTables
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/genbank/tests/tools/updateCdnaInfoMolColumn
  • lines changed 1, context: html, text, full: html, text
    moved gbroot to /hive/data/outside/genbank
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    load of GENCODE V12
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
  • lines changed 1, context: html, text, full: html, text
    load of GENCODE V12
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV11.html
  • lines changed 1, context: html, text, full: html, text
    load of GENCODE V12
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.html
  • lines changed 345, context: html, text, full: html, text
    load of GENCODE V12
  • lines changed 3, context: html, text, full: html, text
    load of GENCODE V12
  • lines changed 5, context: html, text, full: html, text
    documenting lifting chrM GENCODE annotations
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.ra
  • lines changed 223, context: html, text, full: html, text
    load of GENCODE V12
  • lines changed 69, context: html, text, full: html, text
    load of GENCODE V12