Commits for markd

v267_base to v268_preview (2012-05-15 to 2012-05-22) v268

• moved gbroot to /hive/data/outside/genbank
  • src/hg/makeDb/genbank/doc/initial-load.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/align-genbank - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/build-genbank - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/build.crontab - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/ccds-import - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgdownload-copy - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgnfs1-copy - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev-dbload - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.crontab - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/mkdownload - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/genbank/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/align/gbAlignSetup - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/align/gbPython - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/ccds/README - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/extFileUpdate/extFileTool - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/py/genbank/GbIndex.py - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/process/gbMkOrganismList - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/repair/extFileFindLost - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/repair/repairMgcOrfeome - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/tests/tools/getTblOverhead - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/genbank/tests/tools/modifyTablesTemplate - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/tests/tools/optimizeTables - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/tests/tools/updateCdnaInfoMolColumn - lines changed 1, context: html, text, full: html, text
• removed outdate /cluster/genbank reference
  • src/hg/makeDb/genbank/src/align/gbAlignStep - lines changed 1, context: html, text, full: html, text
• work around #! file path size limit
  • src/hg/makeDb/genbank/src/process/gbMkOrganismList - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/repair/repairMgcOrfeome - lines changed 1, context: html, text, full: html, text
• work around #! file path size limit
  • src/hg/makeDb/genbank/src/align/gbAlignSetup - lines changed 1, context: html, text, full: html, text
• allow multiple entries for an given item name
  • src/hg/lib/itemDetailsHtml.sql - lines changed 1, context: html, text, full: html, text
• fixed typo in table description
  • src/hg/inc/encode/wgEncodeGencodePdb.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodePdb.as - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeGencodePdb.sql - lines changed 1, context: html, text, full: html, text
• make index non-unique
  • src/hg/lib/encode/wgEncodeGencodeExonSupport.sql - lines changed 1, context: html, text, full: html, text
• load of GENCODE V12
  • src/hg/makeDb/doc/encodeDccHg19/gencodeV12.txt - lines changed 56, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.html - lines changed 345, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.ra - lines changed 223, context: html, text, full: html, text
• load of GENCODE V12
  • src/hg/makeDb/doc/encodeDccHg19/gencodeV12.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV11.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.ra - lines changed 69, context: html, text, full: html, text
• documenting lifting chrM GENCODE annotations
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.html - lines changed 5, context: html, text, full: html, text