File Changes for hiram

v268_base to v269_preview (2012-06-05 to 2012-06-12) v269

• src/hg/htdocs/images/Chrysemys_picta_bellii.jpg
  • lines changed 0, context: html, text, full: html, text
    photo in public domain courtesy of: U.S. Fish & Wildlife Service
• src/hg/lib/hgFind.c
  • lines changed 8, context: html, text, full: html, text
    simplify the title line for hgGateway
• src/hg/makeDb/doc/choHof1.txt
  • lines changed 67, context: html, text, full: html, text
    done with genbank run
• src/hg/makeDb/doc/chrPic1.txt
  • lines changed 31, context: html, text, full: html, text
    add photo and fix search rule for assembly track/gold table
• src/hg/makeDb/doc/eriEur1.txt
  • lines changed 65, context: html, text, full: html, text
    completed with genbank run and loading
• src/hg/makeDb/doc/gadMor1.txt
  • lines changed 91, context: html, text, full: html, text
    done with genbank run
• src/hg/makeDb/doc/galGal4.txt
  • lines changed 29, context: html, text, full: html, text
    fixup search rule for assembly track/gold table
• src/hg/makeDb/doc/melUnd1.txt
  • lines changed 91, context: html, text, full: html, text
    done with genbank run
• src/hg/makeDb/doc/micMur1.txt
  • lines changed 90, context: html, text, full: html, text
    done with genbank run
• src/hg/makeDb/doc/oreNil2.txt
  • lines changed 92, context: html, text, full: html, text
    done with genbank run
• src/hg/makeDb/doc/proCap1.txt
  • lines changed 90, context: html, text, full: html, text
    finished with genbank run
• src/hg/makeDb/doc/pteVam1.txt
  • lines changed 89, context: html, text, full: html, text
    done with genbank run
• src/hg/makeDb/doc/rn5.txt
  • lines changed 27, context: html, text, full: html, text
    fixup search rule for assembly track/gold table
• src/hg/makeDb/doc/speTri2.txt
  • lines changed 90, context: html, text, full: html, text
    done with genbank run
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    adding melUnd1 to the daily builds
  • lines changed 1, context: html, text, full: html, text
    Added eriEur1.
  • lines changed 1, context: html, text, full: html, text
    Added choHof1.
  • lines changed 1, context: html, text, full: html, text
    Added gadMor1.
  • lines changed 1, context: html, text, full: html, text
    Added oreNil2.
  • lines changed 1, context: html, text, full: html, text
    Added micMur1.
  • lines changed 1, context: html, text, full: html, text
    Added speTri2.
  • lines changed 1, context: html, text, full: html, text
    Added pteVam1.
  • lines changed 1, context: html, text, full: html, text
    Added proCap1.
  • lines changed 1, context: html, text, full: html, text
    Added ochPri2.
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 1, context: html, text, full: html, text
    add ooc file for tenrec/echTel1
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    turn off genbank.mrna.native.load and genbank.mrna.xeno.load for vicPac1
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    adding melUnd1 to the daily builds
  • lines changed 1, context: html, text, full: html, text
    Added eriEur1.
  • lines changed 1, context: html, text, full: html, text
    Added choHof1.
  • lines changed 1, context: html, text, full: html, text
    Added gadMor1.
  • lines changed 1, context: html, text, full: html, text
    Added oreNil2.
  • lines changed 1, context: html, text, full: html, text
    Added micMur1.
  • lines changed 1, context: html, text, full: html, text
    Added speTri2.
  • lines changed 1, context: html, text, full: html, text
    Added pteVam1.
  • lines changed 1, context: html, text, full: html, text
    Added proCap1.
  • lines changed 1, context: html, text, full: html, text
    Added ochPri2.
• src/hg/makeDb/trackDb/chicken/galGal4/description.html
  • lines changed 116, context: html, text, full: html, text
    new auto-generated with new variables
• src/hg/makeDb/trackDb/chicken/galGal4/trackDb.ra
  • lines changed 6, context: html, text, full: html, text
    add search rule for gold table
• src/hg/makeDb/trackDb/dog/canFam3/description.html
  • lines changed 48, context: html, text, full: html, text
    auto-generated minimal gateway page
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.60way.ra
  • lines changed 2, context: html, text, full: html, text
    turning on summary and frames
• src/hg/makeDb/trackDb/rat/rn5/description.html
  • lines changed 47, context: html, text, full: html, text
    new minimalist gateway page and adding chainNet override for Mm10
• src/hg/makeDb/trackDb/rat/rn5/trackDb.chainNet.ra
  • lines changed 5, context: html, text, full: html, text
    new minimalist gateway page and adding chainNet override for Mm10
• src/hg/makeDb/trackDb/rat/rn5/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    new minimalist gateway page and adding chainNet override for Mm10
  • lines changed 6, context: html, text, full: html, text
    adding search rule for assembly track/gold table
• src/hg/makeDb/trackDb/tenrec/echTel1/description.html
  • lines changed 21, context: html, text, full: html, text
    remove description to get a new one
  • lines changed 62, context: html, text, full: html, text
    new minimal description page
• src/hg/makeDb/trackDb/tenrec/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    need searchMethod prefix to get the option of .#s
• src/hg/makeDb/trackDb/turtle/chrPic1/description.html
  • lines changed 119, context: html, text, full: html, text
    auto-constructed gateway page
• src/hg/makeDb/trackDb/turtle/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    add search rule for gold table
  • lines changed 3, context: html, text, full: html, text
    correct searching prefix for gold frag names
• src/hg/utils/automation/configFiles/README
  • lines changed 6, context: html, text, full: html, text
    starting this directory, first one in is rn5 from 2012-06-06
• src/hg/utils/automation/configFiles/canFam3.config.ra
  • lines changed 22, context: html, text, full: html, text
    copy from 2012-06-11 to make gateway page
• src/hg/utils/automation/configFiles/chrPic1.config.ra
  • lines changed 24, context: html, text, full: html, text
    file used on 2012-06-07 to construct gateway page
• src/hg/utils/automation/configFiles/echTel1.config.ra
  • lines changed 22, context: html, text, full: html, text
    very old assembly, very new config file constructed 2012-06-06
• src/hg/utils/automation/configFiles/galGal4.config.ra
  • lines changed 23, context: html, text, full: html, text
    completed file with extra new fields 2012-06-06
• src/hg/utils/automation/configFiles/rn5.config.ra
  • lines changed 22, context: html, text, full: html, text
    starting this directory, first one in is rn5 from 2012-06-06
• src/hg/utils/automation/makeGenomeDb.pl
  • lines changed 152, context: html, text, full: html, text
    implementing the new and improved minimal gateway html page
  • lines changed 9, context: html, text, full: html, text
    add a forceDescription to avoid problems when already exists