Commits for hiram

v268_base to v269_preview (2012-06-05 to 2012-06-12) v269

• need searchMethod prefix to get the option of .#s
  • src/hg/makeDb/trackDb/tenrec/trackDb.ra - lines changed 1, context: html, text, full: html, text
• implementing the new and improved minimal gateway html page
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 152, context: html, text, full: html, text
• starting this directory, first one in is rn5 from 2012-06-06
  • src/hg/utils/automation/configFiles/README - lines changed 6, context: html, text, full: html, text
  • src/hg/utils/automation/configFiles/rn5.config.ra - lines changed 22, context: html, text, full: html, text
• remove description to get a new one
  • src/hg/makeDb/trackDb/tenrec/echTel1/description.html - lines changed 21, context: html, text, full: html, text
• new minimal description page
  • src/hg/makeDb/trackDb/tenrec/echTel1/description.html - lines changed 62, context: html, text, full: html, text
• very old assembly, very new config file constructed 2012-06-06
  • src/hg/utils/automation/configFiles/echTel1.config.ra - lines changed 22, context: html, text, full: html, text
• add a forceDescription to avoid problems when already exists
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 9, context: html, text, full: html, text
• new minimalist gateway page and adding chainNet override for Mm10
  • src/hg/makeDb/trackDb/rat/rn5/description.html - lines changed 47, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn5/trackDb.chainNet.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn5/trackDb.ra - lines changed 2, context: html, text, full: html, text
• completed file with extra new fields 2012-06-06
  • src/hg/utils/automation/configFiles/galGal4.config.ra - lines changed 23, context: html, text, full: html, text
• new auto-generated with new variables
  • src/hg/makeDb/trackDb/chicken/galGal4/description.html - lines changed 116, context: html, text, full: html, text
• add search rule for gold table
  • src/hg/makeDb/trackDb/turtle/trackDb.ra - lines changed 7, context: html, text, full: html, text
• photo in public domain courtesy of: U.S. Fish & Wildlife Service
  • src/hg/htdocs/images/Chrysemys_picta_bellii.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• auto-constructed gateway page
  • src/hg/makeDb/trackDb/turtle/chrPic1/description.html - lines changed 119, context: html, text, full: html, text
• file used on 2012-06-07 to construct gateway page
  • src/hg/utils/automation/configFiles/chrPic1.config.ra - lines changed 24, context: html, text, full: html, text
• correct searching prefix for gold frag names
  • src/hg/makeDb/trackDb/turtle/trackDb.ra - lines changed 3, context: html, text, full: html, text
• add search rule for gold table
  • src/hg/makeDb/trackDb/chicken/galGal4/trackDb.ra - lines changed 6, context: html, text, full: html, text
• fixup search rule for assembly track/gold table
  • src/hg/makeDb/doc/galGal4.txt - lines changed 29, context: html, text, full: html, text
• adding search rule for assembly track/gold table
  • src/hg/makeDb/trackDb/rat/rn5/trackDb.ra - lines changed 6, context: html, text, full: html, text
• add ooc file for tenrec/echTel1
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• turning on summary and frames
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.60way.ra - lines changed 2, context: html, text, full: html, text
• add photo and fix search rule for assembly track/gold table
  • src/hg/makeDb/doc/chrPic1.txt - lines changed 31, context: html, text, full: html, text
• fixup search rule for assembly track/gold table
  • src/hg/makeDb/doc/rn5.txt - lines changed 27, context: html, text, full: html, text
• turn off genbank.mrna.native.load and genbank.mrna.xeno.load for vicPac1
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 2, context: html, text, full: html, text
• adding melUnd1 to the daily builds
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• done with genbank run
  • src/hg/makeDb/doc/melUnd1.txt - lines changed 91, context: html, text, full: html, text
• Added eriEur1.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• completed with genbank run and loading
  • src/hg/makeDb/doc/eriEur1.txt - lines changed 65, context: html, text, full: html, text
• Added choHof1.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• done with genbank run
  • src/hg/makeDb/doc/choHof1.txt - lines changed 67, context: html, text, full: html, text
• Added gadMor1.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• done with genbank run
  • src/hg/makeDb/doc/gadMor1.txt - lines changed 91, context: html, text, full: html, text
• simplify the title line for hgGateway
  • src/hg/lib/hgFind.c - lines changed 8, context: html, text, full: html, text
• Added oreNil2.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• done with genbank run
  • src/hg/makeDb/doc/oreNil2.txt - lines changed 92, context: html, text, full: html, text
• Added micMur1.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• done with genbank run
  • src/hg/makeDb/doc/micMur1.txt - lines changed 90, context: html, text, full: html, text
• Added speTri2.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• done with genbank run
  • src/hg/makeDb/doc/speTri2.txt - lines changed 90, context: html, text, full: html, text
• Added pteVam1.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• done with genbank run
  • src/hg/makeDb/doc/pteVam1.txt - lines changed 89, context: html, text, full: html, text
• Added proCap1.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• finished with genbank run
  • src/hg/makeDb/doc/proCap1.txt - lines changed 90, context: html, text, full: html, text
• auto-generated minimal gateway page
  • src/hg/makeDb/trackDb/dog/canFam3/description.html - lines changed 48, context: html, text, full: html, text
• copy from 2012-06-11 to make gateway page
  • src/hg/utils/automation/configFiles/canFam3.config.ra - lines changed 22, context: html, text, full: html, text
• Added ochPri2.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text