File Changes for hiram

v270_preview to v270_preview2 (2012-07-03 to 2012-07-10) v270

• src/hg/htdocs/images/Gadus_morhua.jpg
  • lines changed 0, context: html, text, full: html, text
    public domain painting from wikigallery painter Andreas Ludwig Kruger
• src/hg/htdocs/images/Melopsittacus_undulatus.jpg
  • lines changed 0, context: html, text, full: html, text
    public domain photograph from Wikimedia commons by Jen Smith
• src/hg/makeDb/doc/canFam3.txt
  • lines changed 23, context: html, text, full: html, text
    lastz hg19 to canFam3 complete
• src/hg/makeDb/doc/echTel1.txt
  • lines changed 24, context: html, text, full: html, text
    swap hg19 lastz done
  • lines changed 0, context: html, text, full: html, text
    remove blanks at end of lines
• src/hg/makeDb/doc/hg19.txt
  • lines changed 9, context: html, text, full: html, text
    completed echTel1 chain net
  • lines changed 60, context: html, text, full: html, text
    lastz hg19 to canFam3 complete
• src/hg/makeDb/doc/mm10.txt
  • lines changed 533, context: html, text, full: html, text
    done with phyloP phastCons 60-way rework
  • lines changed 116, context: html, text, full: html, text
    download files ready to go for the 60-way
  • lines changed 53, context: html, text, full: html, text
    hgPal downloads constructed for the 60-way
• src/hg/makeDb/trackDb/armadillo/dasNov3/description.html
  • lines changed 119, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/birds/melUnd1/description.html
  • lines changed 119, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/bushbaby/otoGar3/description.html
  • lines changed 119, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/cat/felCat5/description.html
  • lines changed 133, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/chimp/panTro4/description.html
  • lines changed 116, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/gadMor/gadMor1/description.html
  • lines changed 116, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/gibbon/nomLeu2/description.html
  • lines changed 116, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/hedgehog/eriEur1/description.html
  • lines changed 115, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/kangarooRat/dipOrd1/description.html
  • lines changed 114, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/megabat/pteVam1/description.html
  • lines changed 114, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/mouse/mm10/cons60way.html
  • lines changed 486, context: html, text, full: html, text
    initial contents
  • lines changed 149, context: html, text, full: html, text
    cleaned up pretty much done
  • lines changed 11, context: html, text, full: html, text
    correct ensGene version indication
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.60way.ra
  • lines changed 138, context: html, text, full: html, text
    new versions of phastCons and phyloP for subsets and adding subset vertebrate
• src/hg/makeDb/trackDb/mouseLemur/micMur1/description.html
  • lines changed 113, context: html, text, full: html, text
    contents from minimal makeGenomeDb.pl script
• src/hg/makeDb/trackDb/pika/ochPri2/description.html
  • lines changed 114, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/rhesus/rheMac3/description.html
  • lines changed 119, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
  • lines changed 2, context: html, text, full: html, text
    correct assembly number 310688
• src/hg/makeDb/trackDb/rockHyrax/proCap1/description.html
  • lines changed 114, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/saiBol/saiBol1/description.html
  • lines changed 114, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/shrew/sorAra1/description.html
  • lines changed 114, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/sloth/choHof1/description.html
  • lines changed 134, context: html, text, full: html, text
    brought up to date with all current settings
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 2, context: html, text, full: html, text
    new sGroups for mm10 60-way Glire and Placental
  • lines changed 2, context: html, text, full: html, text
    removed too many tag types
• src/hg/makeDb/trackDb/tarsier/tarSyr1/description.html
  • lines changed 115, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/makeDb/trackDb/treeShrew/tupBel1/description.html
  • lines changed 114, context: html, text, full: html, text
    minimal page from makeGenomeDb.pl
• src/hg/utils/automation/configFiles/choHof1.config.ra
  • lines changed 24, context: html, text, full: html, text
    brought up to date with all current settings
• src/hg/utils/automation/configFiles/dasNov3.config.ra
  • lines changed 23, context: html, text, full: html, text
    up to date with current parameters
• src/hg/utils/automation/configFiles/dipOrd1.config.ra
  • lines changed 23, context: html, text, full: html, text
    up to date with current required settings
• src/hg/utils/automation/configFiles/eriEur1.config.ra
  • lines changed 23, context: html, text, full: html, text
    updated ancient contents to new style
• src/hg/utils/automation/configFiles/felCat5.config.ra
  • lines changed 24, context: html, text, full: html, text
    up to date with current required parameters
• src/hg/utils/automation/configFiles/gadMor1.config.ra
  • lines changed 22, context: html, text, full: html, text
    up to date with required parameters
• src/hg/utils/automation/configFiles/melUnd1.config.ra
  • lines changed 23, context: html, text, full: html, text
    up to date with current parameters
• src/hg/utils/automation/configFiles/micMur1.config.ra
  • lines changed 24, context: html, text, full: html, text
    updated ancient contents to new style
• src/hg/utils/automation/configFiles/nomLeu2.config.ra
  • lines changed 23, context: html, text, full: html, text
    up to date with required parameters
• src/hg/utils/automation/configFiles/ochPri2.config.ra
  • lines changed 23, context: html, text, full: html, text
    up to date with current required variables
• src/hg/utils/automation/configFiles/otoGar3.config.ra
  • lines changed 22, context: html, text, full: html, text
    up to date with required parameters
• src/hg/utils/automation/configFiles/panTro4.config.ra
  • lines changed 25, context: html, text, full: html, text
    up to date with required parameters
• src/hg/utils/automation/configFiles/proCap1.config.ra
  • lines changed 24, context: html, text, full: html, text
    up to date with required parameters
• src/hg/utils/automation/configFiles/pteVam1.config.ra
  • lines changed 23, context: html, text, full: html, text
    up to date with required parameters
• src/hg/utils/automation/configFiles/rheMac3.config.ra
  • lines changed 23, context: html, text, full: html, text
    up to date with required parameters
• src/hg/utils/automation/configFiles/saiBol1.config.ra
  • lines changed 26, context: html, text, full: html, text
    up to date with required parameters
• src/hg/utils/automation/configFiles/sorAra1.config.ra
  • lines changed 25, context: html, text, full: html, text
    updated ancient contents to new style
• src/hg/utils/automation/configFiles/tarSyr1.config.ra
  • lines changed 24, context: html, text, full: html, text
    up to date with required parameters
• src/hg/utils/automation/configFiles/tupBel1.config.ra
  • lines changed 25, context: html, text, full: html, text
    updated ancient contents to new style