Commits for hiram

v270_preview to v270_preview2 (2012-07-03 to 2012-07-10) v270

• done with phyloP phastCons 60-way rework
  • src/hg/makeDb/doc/mm10.txt - lines changed 533, context: html, text, full: html, text
• new versions of phastCons and phyloP for subsets and adding subset vertebrate
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.60way.ra - lines changed 138, context: html, text, full: html, text
• completed echTel1 chain net
  • src/hg/makeDb/doc/hg19.txt - lines changed 9, context: html, text, full: html, text
• swap hg19 lastz done
  • src/hg/makeDb/doc/echTel1.txt - lines changed 24, context: html, text, full: html, text
• remove blanks at end of lines
  • src/hg/makeDb/doc/echTel1.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• lastz hg19 to canFam3 complete
  • src/hg/makeDb/doc/canFam3.txt - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 60, context: html, text, full: html, text
• download files ready to go for the 60-way
  • src/hg/makeDb/doc/mm10.txt - lines changed 116, context: html, text, full: html, text
• initial contents
  • src/hg/makeDb/trackDb/mouse/mm10/cons60way.html - lines changed 486, context: html, text, full: html, text
• cleaned up pretty much done
  • src/hg/makeDb/trackDb/mouse/mm10/cons60way.html - lines changed 149, context: html, text, full: html, text
• new sGroups for mm10 60-way Glire and Placental
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
• correct ensGene version indication
  • src/hg/makeDb/trackDb/mouse/mm10/cons60way.html - lines changed 11, context: html, text, full: html, text
• removed too many tag types
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
• contents from minimal makeGenomeDb.pl script
  • src/hg/makeDb/trackDb/mouseLemur/micMur1/description.html - lines changed 113, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/hedgehog/eriEur1/description.html - lines changed 115, context: html, text, full: html, text
• updated ancient contents to new style
  • src/hg/utils/automation/configFiles/eriEur1.config.ra - lines changed 23, context: html, text, full: html, text
  • src/hg/utils/automation/configFiles/micMur1.config.ra - lines changed 24, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/shrew/sorAra1/description.html - lines changed 114, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/treeShrew/tupBel1/description.html - lines changed 114, context: html, text, full: html, text
• updated ancient contents to new style
  • src/hg/utils/automation/configFiles/sorAra1.config.ra - lines changed 25, context: html, text, full: html, text
  • src/hg/utils/automation/configFiles/tupBel1.config.ra - lines changed 25, context: html, text, full: html, text
• brought up to date with all current settings
  • src/hg/makeDb/trackDb/sloth/choHof1/description.html - lines changed 134, context: html, text, full: html, text
• brought up to date with all current settings
  • src/hg/utils/automation/configFiles/choHof1.config.ra - lines changed 24, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/kangarooRat/dipOrd1/description.html - lines changed 114, context: html, text, full: html, text
• up to date with current required settings
  • src/hg/utils/automation/configFiles/dipOrd1.config.ra - lines changed 23, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/pika/ochPri2/description.html - lines changed 114, context: html, text, full: html, text
• up to date with current required variables
  • src/hg/utils/automation/configFiles/ochPri2.config.ra - lines changed 23, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/rockHyrax/proCap1/description.html - lines changed 114, context: html, text, full: html, text
• up to date with required parameters
  • src/hg/utils/automation/configFiles/proCap1.config.ra - lines changed 24, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/megabat/pteVam1/description.html - lines changed 114, context: html, text, full: html, text
• up to date with required parameters
  • src/hg/utils/automation/configFiles/pteVam1.config.ra - lines changed 23, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/tarsier/tarSyr1/description.html - lines changed 115, context: html, text, full: html, text
• up to date with required parameters
  • src/hg/utils/automation/configFiles/tarSyr1.config.ra - lines changed 24, context: html, text, full: html, text
• hgPal downloads constructed for the 60-way
  • src/hg/makeDb/doc/mm10.txt - lines changed 53, context: html, text, full: html, text
• public domain painting from wikigallery painter Andreas Ludwig Kruger
  • src/hg/htdocs/images/Gadus_morhua.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/gadMor/gadMor1/description.html - lines changed 116, context: html, text, full: html, text
• up to date with required parameters
  • src/hg/utils/automation/configFiles/gadMor1.config.ra - lines changed 22, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/rhesus/rheMac3/description.html - lines changed 119, context: html, text, full: html, text
• correct assembly number 310688
  • src/hg/makeDb/trackDb/rhesus/rheMac3/description.html - lines changed 2, context: html, text, full: html, text
• up to date with required parameters
  • src/hg/utils/automation/configFiles/rheMac3.config.ra - lines changed 23, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/armadillo/dasNov3/description.html - lines changed 119, context: html, text, full: html, text
• up to date with current parameters
  • src/hg/utils/automation/configFiles/dasNov3.config.ra - lines changed 23, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/cat/felCat5/description.html - lines changed 133, context: html, text, full: html, text
• up to date with current required parameters
  • src/hg/utils/automation/configFiles/felCat5.config.ra - lines changed 24, context: html, text, full: html, text
• public domain photograph from Wikimedia commons by Jen Smith
  • src/hg/htdocs/images/Melopsittacus_undulatus.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/birds/melUnd1/description.html - lines changed 119, context: html, text, full: html, text
• up to date with current parameters
  • src/hg/utils/automation/configFiles/melUnd1.config.ra - lines changed 23, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/gibbon/nomLeu2/description.html - lines changed 116, context: html, text, full: html, text
• up to date with required parameters
  • src/hg/utils/automation/configFiles/nomLeu2.config.ra - lines changed 23, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/bushbaby/otoGar3/description.html - lines changed 119, context: html, text, full: html, text
• up to date with required parameters
  • src/hg/utils/automation/configFiles/otoGar3.config.ra - lines changed 22, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/chimp/panTro4/description.html - lines changed 116, context: html, text, full: html, text
• up to date with required parameters
  • src/hg/utils/automation/configFiles/panTro4.config.ra - lines changed 25, context: html, text, full: html, text
• minimal page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/saiBol/saiBol1/description.html - lines changed 114, context: html, text, full: html, text
• up to date with required parameters
  • src/hg/utils/automation/configFiles/saiBol1.config.ra - lines changed 26, context: html, text, full: html, text