Commits for hiram
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v270_preview to v270_preview2 (2012-07-03 to 2012-07-10) v270
- done with phyloP phastCons 60-way rework
- src/hg/makeDb/doc/mm10.txt - lines changed 533, context: html, text, full: html, text
- new versions of phastCons and phyloP for subsets and adding subset vertebrate
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.60way.ra - lines changed 138, context: html, text, full: html, text
- completed echTel1 chain net
- src/hg/makeDb/doc/hg19.txt - lines changed 9, context: html, text, full: html, text
- swap hg19 lastz done
- src/hg/makeDb/doc/echTel1.txt - lines changed 24, context: html, text, full: html, text
- remove blanks at end of lines
- src/hg/makeDb/doc/echTel1.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- lastz hg19 to canFam3 complete
- src/hg/makeDb/doc/canFam3.txt - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/doc/hg19.txt - lines changed 60, context: html, text, full: html, text
- download files ready to go for the 60-way
- src/hg/makeDb/doc/mm10.txt - lines changed 116, context: html, text, full: html, text
- initial contents
- src/hg/makeDb/trackDb/mouse/mm10/cons60way.html - lines changed 486, context: html, text, full: html, text
- cleaned up pretty much done
- src/hg/makeDb/trackDb/mouse/mm10/cons60way.html - lines changed 149, context: html, text, full: html, text
- new sGroups for mm10 60-way Glire and Placental
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
- correct ensGene version indication
- src/hg/makeDb/trackDb/mouse/mm10/cons60way.html - lines changed 11, context: html, text, full: html, text
- removed too many tag types
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
- contents from minimal makeGenomeDb.pl script
- src/hg/makeDb/trackDb/mouseLemur/micMur1/description.html - lines changed 113, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/hedgehog/eriEur1/description.html - lines changed 115, context: html, text, full: html, text
- updated ancient contents to new style
- src/hg/utils/automation/configFiles/eriEur1.config.ra - lines changed 23, context: html, text, full: html, text
- src/hg/utils/automation/configFiles/micMur1.config.ra - lines changed 24, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/shrew/sorAra1/description.html - lines changed 114, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/treeShrew/tupBel1/description.html - lines changed 114, context: html, text, full: html, text
- updated ancient contents to new style
- src/hg/utils/automation/configFiles/sorAra1.config.ra - lines changed 25, context: html, text, full: html, text
- src/hg/utils/automation/configFiles/tupBel1.config.ra - lines changed 25, context: html, text, full: html, text
- brought up to date with all current settings
- src/hg/makeDb/trackDb/sloth/choHof1/description.html - lines changed 134, context: html, text, full: html, text
- brought up to date with all current settings
- src/hg/utils/automation/configFiles/choHof1.config.ra - lines changed 24, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/kangarooRat/dipOrd1/description.html - lines changed 114, context: html, text, full: html, text
- up to date with current required settings
- src/hg/utils/automation/configFiles/dipOrd1.config.ra - lines changed 23, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/pika/ochPri2/description.html - lines changed 114, context: html, text, full: html, text
- up to date with current required variables
- src/hg/utils/automation/configFiles/ochPri2.config.ra - lines changed 23, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/rockHyrax/proCap1/description.html - lines changed 114, context: html, text, full: html, text
- up to date with required parameters
- src/hg/utils/automation/configFiles/proCap1.config.ra - lines changed 24, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/megabat/pteVam1/description.html - lines changed 114, context: html, text, full: html, text
- up to date with required parameters
- src/hg/utils/automation/configFiles/pteVam1.config.ra - lines changed 23, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/tarsier/tarSyr1/description.html - lines changed 115, context: html, text, full: html, text
- up to date with required parameters
- src/hg/utils/automation/configFiles/tarSyr1.config.ra - lines changed 24, context: html, text, full: html, text
- hgPal downloads constructed for the 60-way
- src/hg/makeDb/doc/mm10.txt - lines changed 53, context: html, text, full: html, text
- public domain painting from wikigallery painter Andreas Ludwig Kruger
- src/hg/htdocs/images/Gadus_morhua.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/gadMor/gadMor1/description.html - lines changed 116, context: html, text, full: html, text
- up to date with required parameters
- src/hg/utils/automation/configFiles/gadMor1.config.ra - lines changed 22, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/rhesus/rheMac3/description.html - lines changed 119, context: html, text, full: html, text
- correct assembly number 310688
- src/hg/makeDb/trackDb/rhesus/rheMac3/description.html - lines changed 2, context: html, text, full: html, text
- up to date with required parameters
- src/hg/utils/automation/configFiles/rheMac3.config.ra - lines changed 23, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/armadillo/dasNov3/description.html - lines changed 119, context: html, text, full: html, text
- up to date with current parameters
- src/hg/utils/automation/configFiles/dasNov3.config.ra - lines changed 23, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/cat/felCat5/description.html - lines changed 133, context: html, text, full: html, text
- up to date with current required parameters
- src/hg/utils/automation/configFiles/felCat5.config.ra - lines changed 24, context: html, text, full: html, text
- public domain photograph from Wikimedia commons by Jen Smith
- src/hg/htdocs/images/Melopsittacus_undulatus.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/birds/melUnd1/description.html - lines changed 119, context: html, text, full: html, text
- up to date with current parameters
- src/hg/utils/automation/configFiles/melUnd1.config.ra - lines changed 23, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/gibbon/nomLeu2/description.html - lines changed 116, context: html, text, full: html, text
- up to date with required parameters
- src/hg/utils/automation/configFiles/nomLeu2.config.ra - lines changed 23, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/bushbaby/otoGar3/description.html - lines changed 119, context: html, text, full: html, text
- up to date with required parameters
- src/hg/utils/automation/configFiles/otoGar3.config.ra - lines changed 22, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/chimp/panTro4/description.html - lines changed 116, context: html, text, full: html, text
- up to date with required parameters
- src/hg/utils/automation/configFiles/panTro4.config.ra - lines changed 25, context: html, text, full: html, text
- minimal page from makeGenomeDb.pl
- src/hg/makeDb/trackDb/saiBol/saiBol1/description.html - lines changed 114, context: html, text, full: html, text
- up to date with required parameters
- src/hg/utils/automation/configFiles/saiBol1.config.ra - lines changed 26, context: html, text, full: html, text
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