File Changes for wong

v271_preview2 to v271_base (2012-07-31 to 2012-08-07) v271

• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 4, context: html, text, full: html, text
    adding in bed cluster
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeBroadHistone.release3.notes
  • lines changed 3322, context: html, text, full: html, text
    adding in Broad Histone notes
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeGisRnaPet.release2.notes
  • lines changed 16, context: html, text, full: html, text
    fixed notes
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwDgf.release4.notes
  • lines changed 189, context: html, text, full: html, text
    updating notes for uw dgf
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
  • lines changed 380, context: html, text, full: html, text
    added in md5sums and added treatment as a expVar
  • lines changed 877, context: html, text, full: html, text
    adding in Broad Histone tracks
  • lines changed 56, context: html, text, full: html, text
    added in dateUnrestricted dates
  • lines changed 1406, context: html, text, full: html, text
    fixes for QA for broad histone
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 641, context: html, text, full: html, text
    added in md5sums
  • lines changed 4722, context: html, text, full: html, text
    spacing issues in the text
  • lines changed 216, context: html, text, full: html, text
    added in mdt5sums and some expIds
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
  • lines changed 47, context: html, text, full: html, text
    added in md5sums
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
  • lines changed 172, context: html, text, full: html, text
    added in md5sums
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
  • lines changed 265, context: html, text, full: html, text
    added in expIds for uw dgf
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.html
  • lines changed 14, context: html, text, full: html, text
    html fixes
  • lines changed 2, context: html, text, full: html, text
    html fixes for broad
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.ra
  • lines changed 813, context: html, text, full: html, text
    fixed labels
  • lines changed 1, context: html, text, full: html, text
    removing default peak options box
  • lines changed 111, context: html, text, full: html, text
    fixes for QA for broad histone
  • lines changed 319, context: html, text, full: html, text
    more qa fixes for broad histone
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra
  • lines changed 747, context: html, text, full: html, text
    added in new tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release4.html
  • lines changed 1, context: html, text, full: html, text
    added in new release date
  • lines changed 11, context: html, text, full: html, text
    fixed for qa dgf html
  • lines changed 1, context: html, text, full: html, text
    fixing html link
  • lines changed 2, context: html, text, full: html, text
    added version number to bowtie
  • lines changed 1, context: html, text, full: html, text
    added version number to bowtie perperly this time
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release4.ra
  • lines changed 71, context: html, text, full: html, text
    first attempt at labels for uw dgf
  • lines changed 208, context: html, text, full: html, text
    removing unnecessary lines
  • lines changed 4, context: html, text, full: html, text
    last of the labels
  • lines changed 4, context: html, text, full: html, text
    adding rep tags for uw dgf
  • lines changed 5, context: html, text, full: html, text
    more shortlabels for uw dgf
  • lines changed 43, context: html, text, full: html, text
    removed filter composite
  • lines changed 0, context: html, text, full: html, text
    spacing issues in the text
  • lines changed 1, context: html, text, full: html, text
    added proper link, made draw window 100m
  • lines changed 1, context: html, text, full: html, text
    max window to 250M to encompass chr1
  • lines changed 1, context: html, text, full: html, text
    fixed window again
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 137, context: html, text, full: html, text
    added in known expIds
  • lines changed 469, context: html, text, full: html, text
    added in the rest of the expIds
  • lines changed 729, context: html, text, full: html, text
    added in the last of the missing cshl long mouse tracks