Commits for cricket

v270_base to v271_preview (2012-07-17 to 2012-07-24) v271

• Redoing release 1 notes in correct version
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeUncBsuProt.release1.notes - lines changed 52, context: html, text, full: html, text
• Revising notes file to have supplemental and to have the correct attic lists
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlShortRnaSeq.release3.notes - lines changed 123, context: html, text, full: html, text
• Adding new genedenovos and transcript denovos
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 4857, context: html, text, full: html, text
• Adding new release for CSHL Long
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html - lines changed 194, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 6622, context: html, text, full: html, text
• Adding the Transcript Denovo stanzas commented out. There is debate on if we are to display them
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 793, context: html, text, full: html, text
• Adding new submissions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 54, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 154, context: html, text, full: html, text
• Added two new experiments, pulled 6 experiments out of the attic, significantly changed the fileUI and the matrix, changed the data to 9 +
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.ra - lines changed 699, context: html, text, full: html, text
• Removed origAssembly, added md5sums, swapped some attic tags, added some new stanzas
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 520, context: html, text, full: html, text
• Notes file for release3 for Haib RRBS
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibMethylRrbs.release3.notes - lines changed 955, context: html, text, full: html, text
• Needed to sort out some attic confusion
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibMethylRrbs.release3.notes - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.ra - lines changed 16, context: html, text, full: html, text
• Working on the release notes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.html - lines changed 12, context: html, text, full: html, text
• adding expIds
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 621, context: html, text, full: html, text
• Fixing errors found in QA, #6773 Note22
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.ra - lines changed 91, context: html, text, full: html, text
• Adding a few more fixes for Note 22
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.ra - lines changed 3, context: html, text, full: html, text
• Revoking LID47806
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 35, context: html, text, full: html, text
• Changing tags to not have numerals or dashes in the front
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 14, context: html, text, full: html, text