Commits for wong

v272_preview2 to v272_base (2012-08-21 to 2012-08-28) v272

• adding in missing tracks for haib tfbs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 250, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra - lines changed 45, context: html, text, full: html, text
• removing not used controls
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 223, context: html, text, full: html, text
• adding expIds and accessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 191, context: html, text, full: html, text
• adding in last of the tracks
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.ra - lines changed 73, context: html, text, full: html, text
• added in expIds and accessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 335, context: html, text, full: html, text
• added metadata
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 320, context: html, text, full: html, text
• prepping tracks for approval
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 208, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 439, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 12, context: html, text, full: html, text
• adding in notes files
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeOpenChromChip.release2.notes - lines changed 272, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeOpenChromDnase.release3.notes - lines changed 1591, context: html, text, full: html, text
• first pass at labels and other qa things
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 323, context: html, text, full: html, text
• added in md5sums
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 83, context: html, text, full: html, text
• more qa fixes for duke dnase
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 262, context: html, text, full: html, text
• more label corrections
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 4, context: html, text, full: html, text
• label change for iPS NIHi7
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• reversing label change for iPS NIHi7
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• fixed contacts page
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.html - lines changed 10, context: html, text, full: html, text
• moving html file over
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.html - lines changed 320, context: html, text, full: html, text
• qa html fixes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.html - lines changed 25, context: html, text, full: html, text
• more qa fixes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.html - lines changed 2, context: html, text, full: html, text
• qa fixes for open chrom chip
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.html - lines changed 2, context: html, text, full: html, text
• changinh over html and release date
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 2, context: html, text, full: html, text
• updating Encode.pm file type detection mechanisms
  • src/hg/utils/automation/Encode.pm - lines changed 19, context: html, text, full: html, text
• redid short labels for QA
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 155, context: html, text, full: html, text
• more label fixes, and html fixes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 19, context: html, text, full: html, text
• fixed things for qa
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.ra - lines changed 100, context: html, text, full: html, text
• adding in last missing track
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 8, context: html, text, full: html, text
• updating notes for open chrom dnase
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeOpenChromDnase.release3.notes - lines changed 22, context: html, text, full: html, text
• updated density sig labels to be consistent
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.ra - lines changed 36, context: html, text, full: html, text
• making the S lower case
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.ra - lines changed 36, context: html, text, full: html, text
• made it so that treatment is not on by default
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 451, context: html, text, full: html, text
• changing labs over to Stanford-m
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHist.ra - lines changed 73, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 133, context: html, text, full: html, text
• adding in notes
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeOpenChromFaire.release2.notes - lines changed 206, context: html, text, full: html, text