File Changes for galt

v272_preview to v272_preview2 (2012-08-14 to 2012-08-21) v272

• src/hg/hgc/bigBedClick.c
  • lines changed 31, context: html, text, full: html, text
    display multiples for bigBed when more than one record share exactly the same chrom, start, end, and name
• src/hg/hgc/encodeClick.c
  • lines changed 11, context: html, text, full: html, text
    fix hgc/encodeClick doEncodePeak to support items and use them to match unique display - even though multiples are now incredibly rare with new item=name matching, the code improves the display of the multiples by separating them with a vertical space
• src/hg/hgc/hgc.c
  • lines changed 2, context: html, text, full: html, text
    fix hgc/encodeClick doEncodePeak to support items and use them to match unique display - even though multiples are now incredibly rare with new item=name matching, the code improves the display of the multiples by separating them with a vertical space
  • lines changed 2, context: html, text, full: html, text
    display multiples for bigBed when more than one record share exactly the same chrom, start, end, and name
• src/hg/hgc/hgc.h
  • lines changed 1, context: html, text, full: html, text
    fix hgc/encodeClick doEncodePeak to support items and use them to match unique display - even though multiples are now incredibly rare with new item=name matching, the code improves the display of the multiples by separating them with a vertical space
  • lines changed 1, context: html, text, full: html, text
    display multiples for bigBed when more than one record share exactly the same chrom, start, end, and name
• src/utils/bedPileUps/bedPileUps.c
  • lines changed 182, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/bedPileUps/checkBedTablePileUps.csh
  • lines changed 13, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/bedPileUps/makefile
  • lines changed 33, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/bedPileUps/tests/expected/foo.bed.txt
  • lines changed 2, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/bedPileUps/tests/expected/foo2.bed.txt
  • lines changed 2, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/bedPileUps/tests/expected/foo3.bed.txt
  • lines changed 3, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/bedPileUps/tests/expected/foo4.bed.txt
  • lines changed 3, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/bedPileUps/tests/input/foo.bed
  • lines changed 42, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/bedPileUps/tests/input/foo2.bed
  • lines changed 21, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/bedPileUps/tests/input/foo3.bed
  • lines changed 103, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/bedPileUps/tests/input/foo4.bed
  • lines changed 206, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.
• src/utils/makefile
  • lines changed 1, context: html, text, full: html, text
    bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size. Matching is on chrom/start/end with name as an additional option for uniqueness.