Commits for markd
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v272_preview to v272_preview2 (2012-08-14 to 2012-08-21) v272
- imported GENCODE V13
- src/hg/makeDb/doc/encodeDccHg19/gencodeV12.txt - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/encodeDccHg19/gencodeV13.txt - lines changed 63, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV13.html - lines changed 352, context: html, text, full: html, text
- fixed crash accessing 2way consensus pseudogenes because they don't have the extended genePred field
- src/hg/hgTracks/gencodeTracks.c - lines changed 21, context: html, text, full: html, text
- added fogotten V13.ra file
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV13.ra - lines changed 227, context: html, text, full: html, text
- removed extra call to genePredAssignConfiguredName that did nothing
- src/hg/hgTracks/gencodeTracks.c - lines changed 1, context: html, text, full: html, text
- allow overriding CGI_BIN user directory and htdocs in environment
- src/inc/cgi_build_rules.mk - lines changed 10, context: html, text, full: html, text
- handled turning GFF3 transcript records into non-coding genes
- src/hg/utils/gff3ToGenePred/gff3ToGenePred.c - lines changed 49, context: html, text, full: html, text
- src/hg/utils/gff3ToGenePred/tests/expected/geneTranscriptTest.gp - lines changed 3, context: html, text, full: html, text
- src/hg/utils/gff3ToGenePred/tests/input/geneTranscript.gff3 - lines changed 14, context: html, text, full: html, text
- src/hg/utils/gff3ToGenePred/tests/makefile - lines changed 7, context: html, text, full: html, text
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