File Changes for max

v273_preview2 to v273_base (2012-09-11 to 2012-09-18) v273

• src/hg/hgc/hgc.c
  • lines changed 27, context: html, text, full: html, text
    added optional (chrom,start,end)-column matching to itemDetailsHtmlTable code
  • lines changed 6, context: html, text, full: html, text
    fix to (chrom,start,end)-check
• src/hg/utils/automation/makeGenomeDb.pl
  • lines changed 1, context: html, text, full: html, text
    added warning to makeGenomeDb.pl scream if chromosome names are too long
• src/utils/faFilter/faFilter.c
  • lines changed 7, context: html, text, full: html, text
    adding ignore case option to faFilter
  • lines changed 2, context: html, text, full: html, text
    fixed bug in faFilter where -namePatList did not do anything
• src/utils/faFilter/tests/expected/testPatList.fa
  • lines changed 6, context: html, text, full: html, text
    fixed bug in faFilter where -namePatList did not do anything
• src/utils/faFilter/tests/expected/testUniqIc.fa
  • lines changed 2, context: html, text, full: html, text
    adding ignore case option to faFilter
• src/utils/faFilter/tests/input/basicIds.lst
  • lines changed 3, context: html, text, full: html, text
    fixed bug in faFilter where -namePatList did not do anything
• src/utils/faFilter/tests/input/uniqIc.fa
  • lines changed 4, context: html, text, full: html, text
    adding ignore case option to faFilter
• src/utils/faFilter/tests/makefile
  • lines changed 6, context: html, text, full: html, text
    adding ignore case option to faFilter
  • lines changed 8, context: html, text, full: html, text
    fixed bug in faFilter where -namePatList did not do anything
• src/utils/twoBitToFa/makefile
  • lines changed 1, context: html, text, full: html, text
    added -bedPos option and a test for it
• src/utils/twoBitToFa/tests/expected/bed_ml_partial_list.fa
  • lines changed 4, context: html, text, full: html, text
    added -bedPos option and a test for it
• src/utils/twoBitToFa/tests/input/seqlist2.bed
  • lines changed 2, context: html, text, full: html, text
    added -bedPos option and a test for it
• src/utils/twoBitToFa/twoBitToFa.c
  • lines changed 19, context: html, text, full: html, text
    added -bedPos option and a test for it
  • lines changed 1, context: html, text, full: html, text
    help change for twoBitToFa.c
  • lines changed 2, context: html, text, full: html, text
    bugfix: -noMask had no effect when -bed was set