File Changes for rhead

v274_preview2 to v274_base (2012-10-02 to 2012-10-09) v274

• src/hg/makeDb/trackDb/birds/geoFor1/cons7way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/cat/felCat3/multiz4way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/cat/felCat4/cons6way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/chicken/galGal3/multiz7way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/chimp/panTro2/multiz8way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/chimp/panTro3/cons12way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/cow/bosTau4/multiz5way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/drosophila/dm2/multiz15way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/drosophila/dm3/multiz15way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/fugu/fr2/multiz5way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/fugu/fr3/cons8way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/gorilla/gorGor3/cons11way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/horse/equCab2/multiz6way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/human/hg17/multiz17way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/human/hg18/cons44way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/human/hg18/encodeMsaTbaDec07.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/human/hg18/multiz17way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/human/hg18/multiz28way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/human/hg18/multizPrimate.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/human/hg19/cons46way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/lamprey/petMar1/multiz6way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/lancelet/braFlo1/multiz5way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/lizard/anoCar2/cons7way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/marmoset/calJac1/multiz9way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/marmoset/calJac3/cons13way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/medaka/oryLat1/multiz5way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/medaka/oryLat2/multiz5way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/mouse/mm10/cons60way.html
  • lines changed 8, context: html, text, full: html, text
    Punctuation and capitalization changes to table 1. Thanks, Greg.
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
  • lines changed 4, context: html, text, full: html, text
    Removed link to phyloP vertebrate subset tree model, which no longer exists.
  • lines changed 1, context: html, text, full: html, text
    Removed 'as of March 2007' from statement about what the phylogenetic tree is based on.
• src/hg/makeDb/trackDb/mouse/mm8/multiz17way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/mouse/mm9/cons30way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/mouse/mm9/multiz30way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/opossum/monDom4/multiz7way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/opossum/monDom5/multiz9way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/orangutan/ponAbe2/multiz8way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/platypus/ornAna1/multiz6way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/quality.html
  • lines changed 5, context: html, text, full: html, text
    Removed range for scores, and guidelines for intepreting scores, as there is no single standard for meanings of quality scores. See http://redmine.soe.ucsc.edu/issues/7681#note-7.
• src/hg/makeDb/trackDb/rat/rn4/multiz9way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/sacCer/sacCer2/multiz7way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/sacCer/sacCer3/multiz7way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/stickleback/gasAcu1/multiz8way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/worm/ce10/cons7way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/worm/ce10/cons9way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/worm/ce4/multiz5way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/worm/ce6/multiz6way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/worm/ce9/cons10way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/xenTro/xenTro2/multiz7way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/xenTro/xenTro3/cons9way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/zebrafish/danRer4/multiz7way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/zebrafish/danRer6/multiz6way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/hg/makeDb/trackDb/zebrafish/danRer7/cons8way.html
  • lines changed 2, context: html, text, full: html, text
    Removed claim that repeats are shown in lower-case in hgTracks, per http://redmine.soe.ucsc.edu/issues/7038#note-102.
• src/utils/qa/findOrg.csh
  • lines changed 8, context: html, text, full: html, text
    Changed requirement to run on hgwdev to capability to run on either hgwdev or hgwbeta.