Commits for braney

v273_base to v274_preview (2012-09-18 to 2012-09-25) v274

• add instructions to build track of Pfam domains in UCSC genes
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes13.csh - lines changed 11, context: html, text, full: html, text
• move Pfam in UCSC genes track to top level (#8968)
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 9, context: html, text, full: html, text
• checking in the scripts that Fan was actually using to update decipher (#8840)
  • src/utils/decipher/buildDecipher - lines changed 2, context: html, text, full: html, text
  • src/utils/decipher/checkDecipher.sh - lines changed 2, context: html, text, full: html, text
• got it working in /hive/data/outside/otto/decipher (#8840)
  • src/utils/decipher/buildDecipher - lines changed 5, context: html, text, full: html, text
  • src/utils/decipher/checkDecipher.sh - lines changed 16, context: html, text, full: html, text
  • src/utils/decipher/decipherWrapper.sh - lines changed 8, context: html, text, full: html, text
• move decipher directory to be level with omim directory. (#8840)
  • src/hg/utils/decipher/buildDecipher - lines changed 34, context: html, text, full: html, text
  • src/hg/utils/decipher/checkDecipher.sh - lines changed 93, context: html, text, full: html, text
  • src/hg/utils/decipher/decipherWrapper.sh - lines changed 8, context: html, text, full: html, text
  • src/utils/decipher/buildDecipher - lines changed 34, context: html, text, full: html, text
  • src/utils/decipher/checkDecipher.sh - lines changed 93, context: html, text, full: html, text
  • src/utils/decipher/decipherWrapper.sh - lines changed 8, context: html, text, full: html, text
• finished (hopefully) building the proteome database (#7045)
  • src/hg/makeDb/doc/proteins/120806.txt - lines changed 99, context: html, text, full: html, text