File Changes for hiram

v274_preview to v274_preview2 (2012-09-25 to 2012-10-02) v274

• src/hg/makeDb/doc/hg19.txt
  • lines changed 59, context: html, text, full: html, text
    patch 10 for hg19/GRCh37
• src/hg/makeDb/doc/hg19Patch10.txt
  • lines changed 501, context: html, text, full: html, text
    patch 10 for hg19/GRCh37
• src/hg/makeDb/doc/mm10Patch1.txt
  • lines changed 480, context: html, text, full: html, text
    constructed mm10Patch1 browser and tracks on mm10
• src/hg/makeDb/doc/mm10Strains1.txt
  • lines changed 181, context: html, text, full: html, text
    initial database build for mouse strain sequences
• src/hg/makeDb/doc/saiBol1.txt
  • lines changed 2, context: html, text, full: html, text
    fixup assembly ID redmine issue 8887 question 47
• src/hg/makeDb/schema/all.joiner
  • lines changed 7, context: html, text, full: html, text
    fixup xenoRefGene and ensembl database listings, and a couple of new chains, redmine 8887
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    adding mm10Strains1 to the build
• src/hg/makeDb/trackDb/mouse/altSeqComposite.html
  • lines changed 236, context: html, text, full: html, text
    adding GRC patch release html
  • lines changed 9, context: html, text, full: html, text
    fixup chrom 14 color key and FTP site at NCBI
  • lines changed 19, context: html, text, full: html, text
    remove references to haplotypes
• src/hg/makeDb/trackDb/mouse/mm10/altSeqComposite1.ra
  • lines changed 104, context: html, text, full: html, text
    adding the altSeqComposite1 tracks
  • lines changed 14, context: html, text, full: html, text
    remove all references to haplotypes
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    adding the altSeqComposite1 tracks
• src/hg/makeDb/trackDb/mouse/mm10Patch1/trackDb.ra
  • lines changed 30, context: html, text, full: html, text
    add the altSequence and chain to mm10 tracks
• src/hg/makeDb/trackDb/mouse/mm10Strains1/description.html
  • lines changed 63, context: html, text, full: html, text
    mm10 haplotypes (other mouse strains)
• src/hg/makeDb/trackDb/mouse/mm10Strains1/gap.html
  • lines changed 31, context: html, text, full: html, text
    mm10 haplotypes (other mouse strains)
• src/hg/makeDb/trackDb/mouse/mm10Strains1/gold.html
  • lines changed 34, context: html, text, full: html, text
    mm10 haplotypes (other mouse strains)
• src/hg/makeDb/trackDb/mouse/mm10Strains1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    mm10 haplotypes (other mouse strains)
• src/hg/makeDb/trackDb/saiBol/saiBol1/description.html
  • lines changed 2, context: html, text, full: html, text
    fixup assembly ID redmine issue 8887 question 47
• src/hg/utils/automation/configFiles/saiBol1.config.ra
  • lines changed 1, context: html, text, full: html, text
    fixup assembly ID redmine issue 8887 question 47