Commits for hiram

v274_preview to v274_preview2 (2012-09-25 to 2012-10-02) v274

• fixup xenoRefGene and ensembl database listings, and a couple of new chains, redmine 8887
  • src/hg/makeDb/schema/all.joiner - lines changed 7, context: html, text, full: html, text
• constructed mm10Patch1 browser and tracks on mm10
  • src/hg/makeDb/doc/mm10Patch1.txt - lines changed 480, context: html, text, full: html, text
• add the altSequence and chain to mm10 tracks
  • src/hg/makeDb/trackDb/mouse/mm10Patch1/trackDb.ra - lines changed 30, context: html, text, full: html, text
• adding the altSeqComposite1 tracks
  • src/hg/makeDb/trackDb/mouse/mm10/altSeqComposite1.ra - lines changed 104, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 1, context: html, text, full: html, text
• adding GRC patch release html
  • src/hg/makeDb/trackDb/mouse/altSeqComposite.html - lines changed 236, context: html, text, full: html, text
• fixup chrom 14 color key and FTP site at NCBI
  • src/hg/makeDb/trackDb/mouse/altSeqComposite.html - lines changed 9, context: html, text, full: html, text
• patch 10 for hg19/GRCh37
  • src/hg/makeDb/doc/hg19Patch10.txt - lines changed 501, context: html, text, full: html, text
• patch 10 for hg19/GRCh37
  • src/hg/makeDb/doc/hg19.txt - lines changed 59, context: html, text, full: html, text
• fixup assembly ID redmine issue 8887 question 47
  • src/hg/makeDb/doc/saiBol1.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/saiBol/saiBol1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/automation/configFiles/saiBol1.config.ra - lines changed 1, context: html, text, full: html, text
• mm10 haplotypes (other mouse strains)
  • src/hg/makeDb/trackDb/mouse/mm10Strains1/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10Strains1/gap.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10Strains1/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10Strains1/trackDb.ra - lines changed 8, context: html, text, full: html, text
• adding mm10Strains1 to the build
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• initial database build for mouse strain sequences
  • src/hg/makeDb/doc/mm10Strains1.txt - lines changed 181, context: html, text, full: html, text
• remove all references to haplotypes
  • src/hg/makeDb/trackDb/mouse/mm10/altSeqComposite1.ra - lines changed 14, context: html, text, full: html, text
• remove references to haplotypes
  • src/hg/makeDb/trackDb/mouse/altSeqComposite.html - lines changed 19, context: html, text, full: html, text