File Changes for angie

v275_preview to v275_preview2 (2012-10-16 to 2012-10-23) v275

• src/hg/makeDb/trackDb/human/hg19/trackDb.denisova.ra
  • lines changed 4, context: html, text, full: html, text
    Track #8886: shortening too-long longLabels for dhcHumDerDenAnc.
• src/inc/common.mk
  • lines changed 35, context: html, text, full: html, text
    Feature #6336 (redistribution of samtools + tabix + KNETFILE_HOOKS patches):I made a combined, pre-patched package on github:
    https://github.com/AngieHinrichs/samtabix
    and modified common.mk to autodetect the /hive installation and use samtabix
    preferentially to separate installations of samtools and tabix.
    linefile.c is keeping some patch-specific function aliases for backwards
    compatibility with tabix.
    
• src/lib/linefile.c
  • lines changed 6, context: html, text, full: html, text
    Feature #6336 (redistribution of samtools + tabix + KNETFILE_HOOKS patches):I made a combined, pre-patched package on github:
    https://github.com/AngieHinrichs/samtabix
    and modified common.mk to autodetect the /hive installation and use samtabix
    preferentially to separate installations of samtools and tabix.
    linefile.c is keeping some patch-specific function aliases for backwards
    compatibility with tabix.
    
• src/product/README.building.source
  • lines changed 13, context: html, text, full: html, text
    Added new environment variables USE_SAMTABIX and SAMTABIXDIR.