Commits for angie

v275_preview to v275_preview2 (2012-10-16 to 2012-10-23) v275

• Feature #6336 (redistribution of samtools + tabix + KNETFILE_HOOKS patches):I made a combined, pre-patched package on github:
  https://github.com/AngieHinrichs/samtabix
  and modified common.mk to autodetect the /hive installation and use samtabix
  preferentially to separate installations of samtools and tabix.
  linefile.c is keeping some patch-specific function aliases for backwards
  compatibility with tabix.
  
  • src/inc/common.mk - lines changed 35, context: html, text, full: html, text
  • src/lib/linefile.c - lines changed 6, context: html, text, full: html, text
• Track #8886: shortening too-long longLabels for dhcHumDerDenAnc.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.denisova.ra - lines changed 4, context: html, text, full: html, text
• Added new environment variables USE_SAMTABIX and SAMTABIXDIR.
  • src/product/README.building.source - lines changed 13, context: html, text, full: html, text