File Changes for angie

v276_preview to v276_preview2 (2012-11-06 to 2012-11-13) v276

• src/hg/hgTracks/vcfTrack.c
  • lines changed 4, context: html, text, full: html, text
    Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
    or hap), hgTracks was hitting an early errAbort that is more appropriate
    for a single-big-file track that is missing its filename. Fix: allow
    bbiNameFromTableChrom to return NULL if there is a seqName column and
    there simply isn't a file for that seqName.
    
• src/hg/hgc/vcfClick.c
  • lines changed 1, context: html, text, full: html, text
    Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
    or hap), hgTracks was hitting an early errAbort that is more appropriate
    for a single-big-file track that is missing its filename. Fix: allow
    bbiNameFromTableChrom to return NULL if there is a seqName column and
    there simply isn't a file for that seqName.
    
• src/hg/inc/hdb.h
  • lines changed 2, context: html, text, full: html, text
    Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
    or hap), hgTracks was hitting an early errAbort that is more appropriate
    for a single-big-file track that is missing its filename. Fix: allow
    bbiNameFromTableChrom to return NULL if there is a seqName column and
    there simply isn't a file for that seqName.
    
• src/hg/lib/hdb.c
  • lines changed 12, context: html, text, full: html, text
    Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
    or hap), hgTracks was hitting an early errAbort that is more appropriate
    for a single-big-file track that is missing its filename. Fix: allow
    bbiNameFromTableChrom to return NULL if there is a seqName column and
    there simply isn't a file for that seqName.
    
• src/hg/lib/vcfUi.c
  • lines changed 8, context: html, text, full: html, text
    Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
    or hap), hgTracks was hitting an early errAbort that is more appropriate
    for a single-big-file track that is missing its filename. Fix: allow
    bbiNameFromTableChrom to return NULL if there is a seqName column and
    there simply isn't a file for that seqName.
    
• src/hg/makeDb/doc/hg19.txt
  • lines changed 105, context: html, text, full: html, text
    Track #8360 (snp137): Reloaded snp137 tables affected by dbSNPcorrections to indel coordinates (b137_SNPContigLoc) and functional
    effect predictions (b137_SNPContigLocusId) in Sep, Oct and Nov.
    
• src/lib/linefile.c
  • lines changed 2, context: html, text, full: html, text
    Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
    or hap), hgTracks was hitting an early errAbort that is more appropriate
    for a single-big-file track that is missing its filename. Fix: allow
    bbiNameFromTableChrom to return NULL if there is a seqName column and
    there simply isn't a file for that seqName.