File Changes for angie
switch to commits view, user indexv276_preview to v276_preview2 (2012-11-06 to 2012-11-13) v276
- src/hg/hgTracks/vcfTrack.c
- lines changed 4, context: html, text, full: html, text
Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
or hap), hgTracks was hitting an early errAbort that is more appropriate
for a single-big-file track that is missing its filename. Fix: allow
bbiNameFromTableChrom to return NULL if there is a seqName column and
there simply isn't a file for that seqName.
- src/hg/hgc/vcfClick.c
- lines changed 1, context: html, text, full: html, text
Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
or hap), hgTracks was hitting an early errAbort that is more appropriate
for a single-big-file track that is missing its filename. Fix: allow
bbiNameFromTableChrom to return NULL if there is a seqName column and
there simply isn't a file for that seqName.
- src/hg/inc/hdb.h
- lines changed 2, context: html, text, full: html, text
Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
or hap), hgTracks was hitting an early errAbort that is more appropriate
for a single-big-file track that is missing its filename. Fix: allow
bbiNameFromTableChrom to return NULL if there is a seqName column and
there simply isn't a file for that seqName.
- src/hg/lib/hdb.c
- lines changed 12, context: html, text, full: html, text
Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
or hap), hgTracks was hitting an early errAbort that is more appropriate
for a single-big-file track that is missing its filename. Fix: allow
bbiNameFromTableChrom to return NULL if there is a seqName column and
there simply isn't a file for that seqName.
- src/hg/lib/vcfUi.c
- lines changed 8, context: html, text, full: html, text
Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
or hap), hgTracks was hitting an early errAbort that is more appropriate
for a single-big-file track that is missing its filename. Fix: allow
bbiNameFromTableChrom to return NULL if there is a seqName column and
there simply isn't a file for that seqName.
- src/hg/makeDb/doc/hg19.txt
- lines changed 105, context: html, text, full: html, text
Track #8360 (snp137): Reloaded snp137 tables affected by dbSNPcorrections to indel coordinates (b137_SNPContigLoc) and functional
effect predictions (b137_SNPContigLocusId) in Sep, Oct and Nov.
- src/lib/linefile.c
- lines changed 2, context: html, text, full: html, text
Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
or hap), hgTracks was hitting an early errAbort that is more appropriate
for a single-big-file track that is missing its filename. Fix: allow
bbiNameFromTableChrom to return NULL if there is a seqName column and
there simply isn't a file for that seqName.
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