Commits for angie

v276_preview to v276_preview2 (2012-11-06 to 2012-11-13) v276

• Track #8360 (snp137): Reloaded snp137 tables affected by dbSNPcorrections to indel coordinates (b137_SNPContigLoc) and functional
  effect predictions (b137_SNPContigLocusId) in Sep, Oct and Nov.
  
  • src/hg/makeDb/doc/hg19.txt - lines changed 105, context: html, text, full: html, text
• Problem: when we have a BAM or VCF track with per-chromosome files,and then view a chromosome for which there is no file (e.g. a random
  or hap), hgTracks was hitting an early errAbort that is more appropriate
  for a single-big-file track that is missing its filename. Fix: allow
  bbiNameFromTableChrom to return NULL if there is a seqName column and
  there simply isn't a file for that seqName.
  
  • src/hg/hgTracks/vcfTrack.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgc/vcfClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/hdb.h - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/vcfUi.c - lines changed 8, context: html, text, full: html, text
  • src/lib/linefile.c - lines changed 2, context: html, text, full: html, text