File Changes for angie

v278_base to v279_preview (2013-01-22 to 2013-01-29) v279

• src/hg/checkTableCoords/checkTableCoords.c
  • lines changed 8, context: html, text, full: html, text
    Added new error condition to checkTableCoords, to avoid a segfault whena table looks like BED12 but has blockCount=0 and NULL blockSizes & chromStarts.
    
• src/hg/hgTables/bigBed.c
  • lines changed 7, context: html, text, full: html, text
    Bug #9860 (TB paste IDs button not working for bigBed) - Steve foundthat while one can now get to the paste IDs page for bigBed, one can't
    get out of it -- clicking submit caused another illegal mysql query.
    Added the rest of the missing implementation for pasted/uploaded IDs
    for bigBed.
    
• src/hg/hgTables/identifiers.c
  • lines changed 14, context: html, text, full: html, text
    Bug #9860 (TB paste IDs button not working for bigBed) - Steve foundthat while one can now get to the paste IDs page for bigBed, one can't
    get out of it -- clicking submit caused another illegal mysql query.
    Added the rest of the missing implementation for pasted/uploaded IDs
    for bigBed.
    
• src/hg/hgVarAnnogrator/hgVarAnnogrator.c
  • lines changed 20, context: html, text, full: html, text
    Feature #6152 (Variant Annotation Integrator): remove an asObj tweak that was causing pgSnp load problem in annoGratorGpVar.Also get the trackDb for the selected subtrack, which is not the behavior of trackDbForTrack -- it returns composite tdb.
    Implement "mustOverlap" grator behavior.
    
• src/hg/inc/hdb.h
  • lines changed 6, context: html, text, full: html, text
    Feature #6152 (Variant Annotation Integrator): remove an asObj tweak that was causing pgSnp load problem in annoGratorGpVar.Also get the trackDb for the selected subtrack, which is not the behavior of trackDbForTrack -- it returns composite tdb.
    Implement "mustOverlap" grator behavior.
    
• src/hg/lib/hdb.c
  • lines changed 7, context: html, text, full: html, text
    Feature #6152 (Variant Annotation Integrator): remove an asObj tweak that was causing pgSnp load problem in annoGratorGpVar.Also get the trackDb for the selected subtrack, which is not the behavior of trackDbForTrack -- it returns composite tdb.
    Implement "mustOverlap" grator behavior.
    
• src/lib/annoGrator.c
  • lines changed 1, context: html, text, full: html, text
    Feature #6152 (Variant Annotation Integrator): remove an asObj tweak that was causing pgSnp load problem in annoGratorGpVar.Also get the trackDb for the selected subtrack, which is not the behavior of trackDbForTrack -- it returns composite tdb.
    Implement "mustOverlap" grator behavior.