Commits for angie
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v278_base to v279_preview (2013-01-22 to 2013-01-29) v279
- Bug #9860 (TB paste IDs button not working for bigBed) - Steve foundthat while one can now get to the paste IDs page for bigBed, one can't
get out of it -- clicking submit caused another illegal mysql query.
Added the rest of the missing implementation for pasted/uploaded IDs
for bigBed.
- src/hg/hgTables/bigBed.c - lines changed 7, context: html, text, full: html, text
- src/hg/hgTables/identifiers.c - lines changed 14, context: html, text, full: html, text
- Added new error condition to checkTableCoords, to avoid a segfault whena table looks like BED12 but has blockCount=0 and NULL blockSizes & chromStarts.
- src/hg/checkTableCoords/checkTableCoords.c - lines changed 8, context: html, text, full: html, text
- Feature #6152 (Variant Annotation Integrator): remove an asObj tweak that was causing pgSnp load problem in annoGratorGpVar.Also get the trackDb for the selected subtrack, which is not the behavior of trackDbForTrack -- it returns composite tdb.
Implement "mustOverlap" grator behavior.
- src/hg/hgVarAnnogrator/hgVarAnnogrator.c - lines changed 20, context: html, text, full: html, text
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