Commits for kate
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v278_base to v279_preview (2013-01-22 to 2013-01-29) v279
- Add downloads. Rework trackDb organization and track labels to address versioning, with input from Brooke. #9954 ENCODE Regulation: DNase Clusters V2
- src/hg/makeDb/doc/encodeRegHg19.txt - lines changed 34, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.release4.ra - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRegDnaseClustered.release2.html - lines changed 30, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRegDnaseClusteredV2.html - lines changed 51, context: html, text, full: html, text
- 1. hgFileUi now only prints data restriction warning if the composite has a restricted object. 2. Add -cv option to mdbPrint to allow alternate CV file. 2. 3. A step toward modularizing restriction timestamp handling. #10006 Mute File UI loud warnings when they are not applicable.
- src/hg/makeDb/mdbUpdate/mdbPrint.c - lines changed 9, context: html, text, full: html, text
- Comment out multiple accession lists until ENCODE experiment matrix can handle them. MLQ #10028: ENCODE Experiment matrix doesn't load
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAwgDnaseUniform.ra - lines changed 14, context: html, text, full: html, text
- Add magic number to metaDb after removing accession lists. MLQ #10028: ENCODE Experiment matrix doesn't load
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAwgDnaseUniform.ra - lines changed 15, context: html, text, full: html, text
- Remove bogus file
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/.nfs000000001c22961e000002bd - lines changed 43, context: html, text, full: html, text
- Remove bogus files
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/acc.out - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/new.txt - lines changed 127, context: html, text, full: html, text
- Merge branch 'master' into reg
- Sorting items in cluster by metadata made more general
- src/hg/hgc/peakClusters.c - lines changed 7, context: html, text, full: html, text
- ENCODE Regulation release 2 changes. Retiring the .releaseN.ra files. Track #7526: ENCODE Regulation track update
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 2, context: html, text, full: html, text
- Retiring the supertrack .releaseN.ra files. Track #7526: ENCODE Regulation track update
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 20, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.release2.ra - lines changed 333, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.release3.ra - lines changed 348, context: html, text, full: html, text
- Add DNase Clusters track update (renaming old to V1). Track #7526: ENCODE Regulation track update
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 32, context: html, text, full: html, text
- Add metaDb for V2 (needed to activate downloads link). Track #9954: ENCODE Regulation: DNase Clusters V2
- src/hg/makeDb/doc/encodeRegHg19.txt - lines changed 12, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRegDnaseClustered.ra - lines changed 8, context: html, text, full: html, text
- Add link to ENCODE portal to track description (non-standard ENCODE track so it doesn't show in top menu bar. Track #9954 ENCODE Regulation: DNase Clusters V2
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRegDnaseClusteredV2.html - lines changed 2, context: html, text, full: html, text
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