File Changes for braney

v280_preview to v280_preview2 (2013-02-19 to 2013-02-26) v280

• src/hg/hgCustom/hgCustom.c
  • lines changed 1, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
• src/hg/hgGateway/hgGateway.c
  • lines changed 1, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 1, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
• src/hg/hgTables/filterFields.c
  • lines changed 2, context: html, text, full: html, text
    don't check for assembly database on close of sql connection (per code review 10237)
• src/hg/hgTables/hgTables.c
  • lines changed 2, context: html, text, full: html, text
    don't check for assembly database on close of sql connection (per code review 10237)
• src/hg/hgTables/joining.c
  • lines changed 2, context: html, text, full: html, text
    don't check for assembly database on close of sql connection (per code review 10237)
• src/hg/hgTracks/config.c
  • lines changed 2, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
• src/hg/hgTracks/hgTracks.c
  • lines changed 5, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
• src/hg/hgc/hgc.c
  • lines changed 1, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
• src/hg/inc/trackHub.h
  • lines changed 2, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
  • lines changed 19, context: html, text, full: html, text
    clean up comments to start with a capital and end with a period (per code review #10237)
  • lines changed 1, context: html, text, full: html, text
    free list of chrom names from twoBit library, change trackHubGetHubLabels to trackHubGetCladeLables (from code review #10237)
• src/hg/lib/cart.c
  • lines changed 3, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
• src/hg/lib/hdb.c
  • lines changed 4, context: html, text, full: html, text
    add comment to somewhat funky mapping of the field "genome" to the field "organism" when using track hubs since track hubs call the assembly name "genome" per code review #10237
  • lines changed 19, context: html, text, full: html, text
    modify twoBit library to auto-recognize whether it's dealing with a URL or local file (per code review #10237)
• src/hg/lib/hgFind.c
  • lines changed 3, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
• src/hg/lib/trackHub.c
  • lines changed 2, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
  • lines changed 27, context: html, text, full: html, text
    clean up comments to start with a capital and end with a period (per code review #10237)
  • lines changed 10, context: html, text, full: html, text
    free list of chrom names from twoBit library, change trackHubGetHubLabels to trackHubGetCladeLables (from code review #10237)
  • lines changed 4, context: html, text, full: html, text
    oops, misspelled slFreeList as slListFree (from code review #10237)
  • lines changed 4, context: html, text, full: html, text
    I added an errAbort for the two cases that assume the hash is initialized (trackHubAssemblyField and trackHubDbDbFromAssemblyDb) (from code review #10237)
  • lines changed 11, context: html, text, full: html, text
    modify twoBit library to auto-recognize whether it's dealing with a URL or local file (per code review #10237)
• src/hg/lib/web.c
  • lines changed 1, context: html, text, full: html, text
    change trackHubRemoveHubName to trackHubSkipName (per code review #10237)
  • lines changed 1, context: html, text, full: html, text
    free list of chrom names from twoBit library, change trackHubGetHubLabels to trackHubGetCladeLables (from code review #10237)
• src/inc/common.h
  • lines changed 2, context: html, text, full: html, text
    modify twoBit library to auto-recognize whether it's dealing with a URL or local file (per code review #10237)
• src/inc/twoBit.h
  • lines changed 2, context: html, text, full: html, text
    add a comment to twoBitOpenExt (#8072)
  • lines changed 6, context: html, text, full: html, text
    modify twoBit library to auto-recognize whether it's dealing with a URL or local file (per code review #10237)
• src/lib/common.c
  • lines changed 6, context: html, text, full: html, text
    modify twoBit library to auto-recognize whether it's dealing with a URL or local file (per code review #10237)
• src/lib/twoBit.c
  • lines changed 44, context: html, text, full: html, text
    modify twoBit library to auto-recognize whether it's dealing with a URL or local file (per code review #10237)