File Changes for kate

v280_base to v281_preview (2013-03-05 to 2013-03-12) v281

• src/hg/htdocs/ENCODE/downloads.html
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    Changes from Brian L. code review (clean-up remaining in-line style directives)
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    Add link to cv.ra file. ENCODE Docs #10346: Making cv.ra accessible
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    Adjust description of segmentation track, responding to request by Michael Hoffman of AWG. ENCODE Docs #10047: Portal - Add section to downloads for analysis fiels on EBI track hub
• src/hg/makeDb/doc/encodeAwgHg19.txt
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    Add metadata generation
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    Add track description. Add target to metadata. ENCODE Track #10042: Uniform TFBS
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    Add accessions to metadata. Rename files for downloads. ENCODE Track #10042: Uniform TFBS
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    Massage labels. Start downloads. ENCODE Track #10042: Uniform TFBS
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAwgTfbsUniform.ra
  • lines changed 11799, context: html, text, full: html, text
    Metadata for ENCODE Uniform TFBS track. RM 10042
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    Add target metadata. Remove dummy dccAccessions. ENCODE Track #10042: Uniform TFBS
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    Add DCC accessions. ENCODE Track #10042: Uniform TFBS
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.html
  • lines changed 108, context: html, text, full: html, text
    Add track description. #10042 - ENCODE Uniform Tfbs
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.ra
  • lines changed 2, context: html, text, full: html, text
    temporary joke image (ref Grauer et al)
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    Add labs. Reformat long labels using ideas from analysis hub
  • lines changed 107, context: html, text, full: html, text
    Trim long labels to proper length. ENCODE Track #10042: Uniform TFBS
  • lines changed 112, context: html, text, full: html, text
    Trim short labels. ENCODE Track #10042: Uniform TFBS
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    Add lab identifier to short labels to distinguish same experiment from different labs. h=HudsonAlpha, s=Stanford, t=UTexas-Austin, w=UWashington, c=USC, v=Harvard, y=Yale, b=Broad. ENCODE Track #10042: Uniform TFBS
  • lines changed 109, context: html, text, full: html, text
    Tweak default on subtracks. ENCODE Track #10042: Uniform TFBS