File Changes for kent

v281_preview to v281_preview2 (2013-03-12 to 2013-03-19) v281

• src/hg/encode3/importEncode2/encode2ExpDumpFlat/encode2ExpDumpFlat.c
  • lines changed 170, context: html, text, full: html, text
    Writing utility to query an encode2 relationalized database to make a flattened version of experiment file, easier for human reading.
• src/hg/encode3/importEncode2/encode2ExpDumpFlat/makefile
  • lines changed 18, context: html, text, full: html, text
    Writing utility to query an encode2 relationalized database to make a flattened version of experiment file, easier for human reading.
• src/hg/encode3/importEncode2/encodeExpToCvDb/encodeExpToCvDb.c
  • lines changed 506, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/encode3/importEncode2/encodeExpToCvDb/experiment.sql
  • lines changed 36, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/encode3/importEncode2/encodeExpToCvDb/go
  • lines changed 5, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/encode3/importEncode2/encodeExpToCvDb/makefile
  • lines changed 18, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
  • lines changed 2, context: html, text, full: html, text
    Adjusting paths in makefile after move of directory.
• src/hg/encode3/importEncode2/encodeExpToCvDb/result.sql
  • lines changed 13, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/encode3/importEncode2/encodeExpToCvDb/series.sql
  • lines changed 8, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/encode3/importEncode2/testCvToSql/README
  • lines changed 2, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/encode3/importEncode2/testCvToSql/makefile
  • lines changed 18, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/encode3/importEncode2/testCvToSql/splitAntibody.ra
  • lines changed 7, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/encode3/importEncode2/testCvToSql/splitAntibody.sql
  • lines changed 34, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/encode3/importEncode2/testCvToSql/splitAntibodyModel.py
  • lines changed 49, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/encode3/importEncode2/testCvToSql/testCvToSql.c
  • lines changed 967, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/encode3/importEncode2/testCvToSql/tryIt
  • lines changed 37, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/oneShot/encodeExpToCvDb/encodeExpToCvDb.c
  • lines changed 9, context: html, text, full: html, text
    Untangling antibody/control conflation a bit.
  • lines changed 506, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/oneShot/encodeExpToCvDb/experiment.sql
  • lines changed 36, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/oneShot/encodeExpToCvDb/go
  • lines changed 5, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/oneShot/encodeExpToCvDb/makefile
  • lines changed 18, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/oneShot/encodeExpToCvDb/result.sql
  • lines changed 13, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/oneShot/encodeExpToCvDb/series.sql
  • lines changed 8, context: html, text, full: html, text
    Starting to move around encode2->encode3 code to a more logical place.
• src/hg/oneShot/testCvToSql/README
  • lines changed 2, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/oneShot/testCvToSql/splitAntibody.ra
  • lines changed 7, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/oneShot/testCvToSql/splitAntibody.sql
  • lines changed 34, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/oneShot/testCvToSql/splitAntibodyModel.py
  • lines changed 49, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/oneShot/testCvToSql/testCvToSql.c
  • lines changed 1, context: html, text, full: html, text
    There's a new targetClass field.
  • lines changed 967, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/hg/oneShot/testCvToSql/tryIt
  • lines changed 37, context: html, text, full: html, text
    Moving more of encode2->3 migration code out of oneShot.
• src/inc/bbiFile.h
  • lines changed 8, context: html, text, full: html, text
    Fixing a bug where sometimes zoom summaries would not be written out by bedGraphToBigWig. I'm seeing a lot of code that can be shared between bedGraphToBigWig and bedToBigBed. Refactored to share some now, will do more shortly.
  • lines changed 32, context: html, text, full: html, text
    Making bedToBigBed and bedGraphToBigWig share more code. Cure is only half as bad as disease (trading sharing 64 lines for having a function with 16 parameters.)
• src/lib/bbiWrite.c
  • lines changed 29, context: html, text, full: html, text
    Fixing a bug where sometimes zoom summaries would not be written out by bedGraphToBigWig. I'm seeing a lot of code that can be shared between bedGraphToBigWig and bedToBigBed. Refactored to share some now, will do more shortly.
  • lines changed 87, context: html, text, full: html, text
    Making bedToBigBed and bedGraphToBigWig share more code. Cure is only half as bad as disease (trading sharing 64 lines for having a function with 16 parameters.)
• src/utils/bedGraphToBigWig/bedGraphToBigWig.c
  • lines changed 31, context: html, text, full: html, text
    Fixing a bug where sometimes zoom summaries would not be written out by bedGraphToBigWig. I'm seeing a lot of code that can be shared between bedGraphToBigWig and bedToBigBed. Refactored to share some now, will do more shortly.
  • lines changed 69, context: html, text, full: html, text
    Making bedToBigBed and bedGraphToBigWig share more code. Cure is only half as bad as disease (trading sharing 64 lines for having a function with 16 parameters.)
• src/utils/bedToBigBed/bedToBigBed.c
  • lines changed 40, context: html, text, full: html, text
    Fixing a bug where sometimes zoom summaries would not be written out by bedGraphToBigWig. I'm seeing a lot of code that can be shared between bedGraphToBigWig and bedToBigBed. Refactored to share some now, will do more shortly.
  • lines changed 71, context: html, text, full: html, text
    Making bedToBigBed and bedGraphToBigWig share more code. Cure is only half as bad as disease (trading sharing 64 lines for having a function with 16 parameters.)