Commits for kent

v281_preview to v281_preview2 (2013-03-12 to 2013-03-19) v281

• Fixing a bug where sometimes zoom summaries would not be written out by bedGraphToBigWig. I'm seeing a lot of code that can be shared between bedGraphToBigWig and bedToBigBed. Refactored to share some now, will do more shortly.
  • src/inc/bbiFile.h - lines changed 8, context: html, text, full: html, text
  • src/lib/bbiWrite.c - lines changed 29, context: html, text, full: html, text
  • src/utils/bedGraphToBigWig/bedGraphToBigWig.c - lines changed 31, context: html, text, full: html, text
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 40, context: html, text, full: html, text
• Making bedToBigBed and bedGraphToBigWig share more code. Cure is only half as bad as disease (trading sharing 64 lines for having a function with 16 parameters.)
  • src/inc/bbiFile.h - lines changed 32, context: html, text, full: html, text
  • src/lib/bbiWrite.c - lines changed 87, context: html, text, full: html, text
  • src/utils/bedGraphToBigWig/bedGraphToBigWig.c - lines changed 69, context: html, text, full: html, text
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 71, context: html, text, full: html, text
• There's a new targetClass field.
  • src/hg/oneShot/testCvToSql/testCvToSql.c - lines changed 1, context: html, text, full: html, text
• Untangling antibody/control conflation a bit.
  • src/hg/oneShot/encodeExpToCvDb/encodeExpToCvDb.c - lines changed 9, context: html, text, full: html, text
• Starting to move around encode2->encode3 code to a more logical place.
  • src/hg/encode3/importEncode2/encodeExpToCvDb/encodeExpToCvDb.c - lines changed 506, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/encodeExpToCvDb/experiment.sql - lines changed 36, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/encodeExpToCvDb/go - lines changed 5, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/encodeExpToCvDb/makefile - lines changed 18, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/encodeExpToCvDb/result.sql - lines changed 13, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/encodeExpToCvDb/series.sql - lines changed 8, context: html, text, full: html, text
  • src/hg/oneShot/encodeExpToCvDb/encodeExpToCvDb.c - lines changed 506, context: html, text, full: html, text
  • src/hg/oneShot/encodeExpToCvDb/experiment.sql - lines changed 36, context: html, text, full: html, text
  • src/hg/oneShot/encodeExpToCvDb/go - lines changed 5, context: html, text, full: html, text
  • src/hg/oneShot/encodeExpToCvDb/makefile - lines changed 18, context: html, text, full: html, text
  • src/hg/oneShot/encodeExpToCvDb/result.sql - lines changed 13, context: html, text, full: html, text
  • src/hg/oneShot/encodeExpToCvDb/series.sql - lines changed 8, context: html, text, full: html, text
• Writing utility to query an encode2 relationalized database to make a flattened version of experiment file, easier for human reading.
  • src/hg/encode3/importEncode2/encode2ExpDumpFlat/encode2ExpDumpFlat.c - lines changed 170, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/encode2ExpDumpFlat/makefile - lines changed 18, context: html, text, full: html, text
• Adjusting paths in makefile after move of directory.
  • src/hg/encode3/importEncode2/encodeExpToCvDb/makefile - lines changed 2, context: html, text, full: html, text
• Moving more of encode2->3 migration code out of oneShot.
  • src/hg/encode3/importEncode2/testCvToSql/README - lines changed 2, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/testCvToSql/makefile - lines changed 18, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/testCvToSql/splitAntibody.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/testCvToSql/splitAntibody.sql - lines changed 34, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/testCvToSql/splitAntibodyModel.py - lines changed 49, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/testCvToSql/testCvToSql.c - lines changed 967, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/testCvToSql/tryIt - lines changed 37, context: html, text, full: html, text
  • src/hg/oneShot/testCvToSql/README - lines changed 2, context: html, text, full: html, text
  • src/hg/oneShot/testCvToSql/splitAntibody.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/oneShot/testCvToSql/splitAntibody.sql - lines changed 34, context: html, text, full: html, text
  • src/hg/oneShot/testCvToSql/splitAntibodyModel.py - lines changed 49, context: html, text, full: html, text
  • src/hg/oneShot/testCvToSql/testCvToSql.c - lines changed 967, context: html, text, full: html, text
  • src/hg/oneShot/testCvToSql/tryIt - lines changed 37, context: html, text, full: html, text