File Changes for hiram

v282_base to v283_preview (2013-04-16 to 2013-04-23) v283

• src/hg/altSplice/affySplice/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/altSplice/altSplice/tests/makefile
  • lines changed 22, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/autoSql/tests/makefile
  • lines changed 2, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/baseMask/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/bedIntersect/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/blastToPsl/tests/makefile
  • lines changed 29, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/checkTableCoords/tests/makefile
  • lines changed 13, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/chimpStuff/chimpChromContigAgp/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/embossToPsl/tests/makefile
  • lines changed 7, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/estOrient/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/gbGetEntries/tests/makefile
  • lines changed 11, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/geneBounds/clusterGenes/tests/makefile
  • lines changed 10, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/genePredHisto/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/genePredSingleCover/tests/makefile
  • lines changed 3, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/genePredToGtf/tests/makefile
  • lines changed 6, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/hgGetAnn/tests/makefile
  • lines changed 13, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/lib/cart.c
  • lines changed 1, context: html, text, full: html, text
    add browser.cgiTime option to allow turning off timing information from CGIs, refs #10611
• src/hg/liftAcross/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/liftOver/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/liftUp/test/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/makeDb/doc/hg19.txt
  • lines changed 28, context: html, text, full: html, text
    COSMIC v64 installed hg19 refs #10158
• src/hg/makeDb/hgLoadMaf/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/makeDb/hgPar/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/makeDb/mdbUpdate/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/mouseStuff/axtToMaf/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/mouseStuff/axtToPsl/tests/makefile
  • lines changed 3, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/mouseStuff/mafRanges/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/mouseStuff/netToAxt/tests/makefile
  • lines changed 5, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/mrnaToGene/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/pslCDnaFilter/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/pslDiff/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/pslHisto/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/pslPartition/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/pslSelect/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/pslStats/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/pslSwap/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/ratStuff/mafSplit/test/makefile
  • lines changed 4, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/spideyToPsl/tests/makefile
  • lines changed 18, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/utils/automation/unplacedScaffolds.pl
  • lines changed 14, context: html, text, full: html, text
    per Angie's code review comment, protect the . in .1 sed regex, refs #10539
• src/hg/utils/bedToPsl/tests/makefile
  • lines changed 4, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/utils/gff3ToGenePred/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/utils/gff3ToPsl/tests/makefile
  • lines changed 7, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/utils/gtfToGenePred/tests/makefile
  • lines changed 18, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/utils/overlapSelect/tests/makefile
  • lines changed 3, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/utils/pslMap/tests/makefile
  • lines changed 22, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/hg/utils/refSeqGet/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/inc/common.mk
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/inc/userApp.mk
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    it is OK to have the destination binary depend upon the objects, refs #9104
• src/makefile
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    begin to move obsolete programs into the cellar, refs #9104
• src/product/ex.hg.conf
  • lines changed 4, context: html, text, full: html, text
    add browser.cgiTime option to allow turning off timing information from CGIs, refs #10611
• src/utils/est2genomeToPsl/tests/makefile
  • lines changed 2, context: html, text, full: html, text
    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/utils/faFilter/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/utils/faRandomize/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630
• src/utils/pslLiftSubrangeBlat/tests/makefile
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    all tests now using binaries from DESTBINDIR, refs #9104 #10630