Commits for hiram

v282_base to v283_preview (2013-04-16 to 2013-04-23) v283

• COSMIC v64 installed hg19 refs #10158
  • src/hg/makeDb/doc/hg19.txt - lines changed 28, context: html, text, full: html, text
• per Angie's code review comment, protect the . in .1 sed regex, refs #10539
  • src/hg/utils/automation/unplacedScaffolds.pl - lines changed 14, context: html, text, full: html, text
• add browser.cgiTime option to allow turning off timing information from CGIs, refs #10611
  • src/hg/lib/cart.c - lines changed 1, context: html, text, full: html, text
• add browser.cgiTime option to allow turning off timing information from CGIs, refs #10611
  • src/product/ex.hg.conf - lines changed 4, context: html, text, full: html, text
• begin to move obsolete programs into the cellar, refs #9104
  • src/makefile - lines changed 23, context: html, text, full: html, text
• it is OK to have the destination binary depend upon the objects, refs #9104
  • src/inc/userApp.mk - lines changed 2, context: html, text, full: html, text
• all tests now using binaries from DESTBINDIR, refs #9104 #10630
  • src/hg/altSplice/affySplice/tests/makefile - lines changed 12, context: html, text, full: html, text
  • src/hg/altSplice/altSplice/tests/makefile - lines changed 22, context: html, text, full: html, text
  • src/hg/autoSql/tests/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/baseMask/tests/makefile - lines changed 6, context: html, text, full: html, text
  • src/hg/bedIntersect/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/blastToPsl/tests/makefile - lines changed 29, context: html, text, full: html, text
  • src/hg/checkTableCoords/tests/makefile - lines changed 13, context: html, text, full: html, text
  • src/hg/chimpStuff/chimpChromContigAgp/tests/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/embossToPsl/tests/makefile - lines changed 7, context: html, text, full: html, text
  • src/hg/estOrient/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/gbGetEntries/tests/makefile - lines changed 11, context: html, text, full: html, text
  • src/hg/geneBounds/clusterGenes/tests/makefile - lines changed 10, context: html, text, full: html, text
  • src/hg/genePredHisto/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/genePredSingleCover/tests/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/genePredToGtf/tests/makefile - lines changed 6, context: html, text, full: html, text
  • src/hg/hgGetAnn/tests/makefile - lines changed 13, context: html, text, full: html, text
  • src/hg/liftAcross/tests/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/liftOver/tests/makefile - lines changed 19, context: html, text, full: html, text
  • src/hg/liftUp/test/makefile - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/hgLoadMaf/tests/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/hgPar/tests/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/mdbUpdate/tests/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/mouseStuff/axtToMaf/tests/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/mouseStuff/axtToPsl/tests/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/mouseStuff/mafRanges/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/mouseStuff/netToAxt/tests/makefile - lines changed 5, context: html, text, full: html, text
  • src/hg/mrnaToGene/tests/makefile - lines changed 23, context: html, text, full: html, text
  • src/hg/pslCDnaFilter/tests/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/pslDiff/tests/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/pslHisto/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/pslPartition/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/pslSelect/tests/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/pslStats/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/pslSwap/tests/makefile - lines changed 10, context: html, text, full: html, text
  • src/hg/ratStuff/mafSplit/test/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/spideyToPsl/tests/makefile - lines changed 18, context: html, text, full: html, text
  • src/hg/utils/bedToPsl/tests/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/gff3ToPsl/tests/makefile - lines changed 7, context: html, text, full: html, text
  • src/hg/utils/gtfToGenePred/tests/makefile - lines changed 18, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/tests/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/pslMap/tests/makefile - lines changed 22, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/inc/common.mk - lines changed 8, context: html, text, full: html, text
  • src/utils/est2genomeToPsl/tests/makefile - lines changed 2, context: html, text, full: html, text
  • src/utils/faFilter/tests/makefile - lines changed 9, context: html, text, full: html, text
  • src/utils/faRandomize/tests/makefile - lines changed 4, context: html, text, full: html, text
  • src/utils/pslLiftSubrangeBlat/tests/makefile - lines changed 6, context: html, text, full: html, text