Commits for galt

v285_preview2 to v285_base (2013-06-11 to 2013-06-18) v285

• not getting the desired behavior on stackdump
  • src/hg/lib/jksql.c - lines changed 10, context: html, text, full: html, text
• fixing bug related to incorrect detection of wildcards in table names and prefixes
  • src/hg/lib/joiner.c - lines changed 3, context: html, text, full: html, text
• removing unneeded fix-sqli functions
  • src/hg/encode/encodeExp/encodeExp.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/peakClusters.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/jksql.h - lines changed 20, context: html, text, full: html, text
  • src/hg/lib/cart.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/jksql.c - lines changed 145, context: html, text, full: html, text
  • src/hg/lib/mdb.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/tests/expected/sqlCheck/sqlCheck.5 - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/tests/expected/sqlCheck/sqlCheck.6 - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/tests/sqlCheck.c - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/tests/sqlCheck.mk - lines changed 4, context: html, text, full: html, text
• cleanup debug stuff
  • src/hg/lib/hgFind.c - lines changed 17, context: html, text, full: html, text
• fixed multiple NOSQLINJ tag error by using sqlSafefFrag instead of sqlSafef
  • src/hg/hgc/regMotif.c - lines changed 1, context: html, text, full: html, text
• removing unneeded cartWebEnd calls that cause the error popWarnHandler underflow
  • src/hg/hgc/ccdsClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/gencodeClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/mgcClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/peakClusters.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgc/retroClick.c - lines changed 1, context: html, text, full: html, text
• needed %-s for where clause
  • src/hg/lib/ccdsInfo.c - lines changed 3, context: html, text, full: html, text
• extending sqlCheckIdentifiersList to support just one literal '.' since it is used by hgTables/bedList.c::bedSqlFieldsExceptForChrom()
  • src/hg/lib/jksql.c - lines changed 34, context: html, text, full: html, text
  • src/hg/lib/tests/expected/sqlCheck/sqlCheck.9 - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/tests/sqlCheck.c - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/tests/sqlCheck.mk - lines changed 2, context: html, text, full: html, text
• getting rid of unintended use of sqlEscapeString -- should be cgiEncode
  • src/hg/encode3/encodeDataWarehouse/edwWebRegisterScript/edwWebRegisterScript.c - lines changed 1, context: html, text, full: html, text
• improving comments, making comments consistent between jksql.c,h and fixing one reference to a renamed function in pubsTracks.c
  • src/hg/hgTracks/pubsTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/jksql.h - lines changed 42, context: html, text, full: html, text
  • src/hg/lib/jksql.c - lines changed 37, context: html, text, full: html, text