File Changes for kent
switch to commits view, user indexv287_preview to v287_preview2 (2013-07-16 to 2013-07-23) v287
- src/hg/encode3/encPipe/sampleBam/makefile
- lines changed 3, context: html, text, full: html, text
Utility to extract a bed subsample of a BAM seems to work.
- src/hg/encode3/encPipe/sampleBam/sampleBam.c
- lines changed 105, context: html, text, full: html, text
Utility to extract a bed subsample of a BAM seems to work.
- lines changed 1, context: html, text, full: html, text
Actually setting random number seed.
- src/hg/encode3/encodeDataWarehouse/edwMakeReplicateQa/edwMakeReplicateQa.c
- lines changed 2, context: html, text, full: html, text
Removing unused options bit of usage statement.
- lines changed 3, context: html, text, full: html, text
Fixing merge conflicts with Galt's SQL injection prevention stuff.
- src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c
- lines changed 75, context: html, text, full: html, text
Adding cursory support (just magic number checking really) for idat and rcc files.
- src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/makk
- lines changed 3, context: html, text, full: html, text
Adding little script to copy to SDSC.
- src/hg/encode3/encodeDataWarehouse/edwRunDaemon/edwRunDaemon.c
- lines changed 1, context: html, text, full: html, text
Making edwRunDaemon restart more gracefully with a well places sleep.
- src/hg/encode3/encodeDataWarehouse/edwScriptSubmit/edwScriptSubmit.c
- lines changed 1, context: html, text, full: html, text
Capitalizing HTTPS in usage message to help emphasize that http just won't do.
- lines changed 20, context: html, text, full: html, text
Moving password checking for script to library.
- lines changed 24, context: html, text, full: html, text
Fixing merge conflicts with Galt's SQL injection prevention stuff.
- src/hg/encode3/encodeDataWarehouse/edwScriptSubmitStatus/edwScriptSubmitStatus.c
- lines changed 26, context: html, text, full: html, text
Moving edwScriptRegistryFromCgi to library.
- src/hg/encode3/encodeDataWarehouse/edwScriptSubmitStatus/makefile
- src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c
- lines changed 2, context: html, text, full: html, text
Adding rcc and idat to supported formats.
- src/hg/encode3/encodeDataWarehouse/edwSubmit/makk
- lines changed 3, context: html, text, full: html, text
Adding little script to copy to SDSC.
- src/hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c
- lines changed 12, context: html, text, full: html, text
Making it so that edwWebBrowse looks for modification time of file in transit before thinking things are stalled. Upping single file time out to 4 hours to accommodate big files from Barcelona.
- lines changed 6, context: html, text, full: html, text
More work to get rid of bogus stalled message.
- src/hg/encode3/encodeDataWarehouse/edwWebBrowse/makk
- lines changed 3, context: html, text, full: html, text
Adding little script to copy to SDSC.
- src/hg/encode3/encodeDataWarehouse/edwWebCreateUser/edwWebCreateUser.c
- lines changed 6, context: html, text, full: html, text
Improving error handling in case where they have a persona account but are not on white list.
- src/hg/encode3/encodeDataWarehouse/edwWebRegisterScript/edwWebRegisterScript.c
- lines changed 12, context: html, text, full: html, text
Improving error handling in case where they have a persona account but are not on white list.
- lines changed 1, context: html, text, full: html, text
Capitalizing HTTPS in usage message to help emphasize that http just won't do.
- lines changed 39, context: html, text, full: html, text
Fixing merge conflicts with Galt's SQL injection prevention stuff.
- src/hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c
- lines changed 38, context: html, text, full: html, text
Making it so that edwWebBrowse looks for modification time of file in transit before thinking things are stalled. Upping single file time out to 4 hours to accommodate big files from Barcelona.
- src/hg/encode3/encodeDataWarehouse/edwWebSubmit/makk
- lines changed 3, context: html, text, full: html, text
Adding little script to copy to SDSC.
- src/hg/encode3/encodeDataWarehouse/inc/edwLib.h
- lines changed 6, context: html, text, full: html, text
Improving error handling in case where they have a persona account but are not on white list.
- lines changed 9, context: html, text, full: html, text
Making it so that edwWebBrowse looks for modification time of file in transit before thinking things are stalled. Upping single file time out to 4 hours to accommodate big files from Barcelona.
- src/hg/encode3/encodeDataWarehouse/inc/encodeDataWarehouse.h
- lines changed 1, context: html, text, full: html, text
Turning replacedBy column to a integer id rather than licensePlate, since the licensePlate really belongs to another table.
- src/hg/encode3/encodeDataWarehouse/lib/edwLib.c
- lines changed 18, context: html, text, full: html, text
Improving error handling in case where they have a persona account but are not on white list.
- lines changed 65, context: html, text, full: html, text
Making it so that edwWebBrowse looks for modification time of file in transit before thinking things are stalled. Upping single file time out to 4 hours to accommodate big files from Barcelona.
- lines changed 62, context: html, text, full: html, text
Fixing merge conflicts with Galt's SQL injection prevention stuff.
- lines changed 4, context: html, text, full: html, text
Fixing merge conflicts with Galt's SQL injection prevention stuff.
- src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.as
- lines changed 1, context: html, text, full: html, text
Turning replacedBy column to a integer id rather than licensePlate, since the licensePlate really belongs to another table.
- src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.c
- lines changed 13, context: html, text, full: html, text
Turning replacedBy column to a integer id rather than licensePlate, since the licensePlate really belongs to another table.
- lines changed 34, context: html, text, full: html, text
Fixing merge conflicts with Galt's SQL injection prevention stuff.
- src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.sql
- lines changed 1, context: html, text, full: html, text
Turning replacedBy column to a integer id rather than licensePlate, since the licensePlate really belongs to another table.
- src/hg/encode3/encodeDataWarehouse/makefile
- lines changed 1, context: html, text, full: html, text
Adding edwScriptSubmitStatus to makefile.
- src/hg/oneShot/freen/freen.c
- lines changed 24, context: html, text, full: html, text
Making freen figure out encode validation key.
- src/inc/obscure.h
- lines changed 3, context: html, text, full: html, text
Adding shuffle array of ints.
- src/inc/paraFetch.h
- lines changed 3, context: html, text, full: html, text
Adding paraFetchTempUpdateTime for tracking file progress.
- src/kehayden/alphaAsm/alphaAsm.c
- lines changed 1832, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- src/kehayden/alphaAsm/makefile
- lines changed 23, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- src/kehayden/alphaAsm/yReads.txt
- lines changed 966, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- src/kehayden/alphaAsm/yTypeOrder.txt
- lines changed 34, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- src/kehayden/linearSat/alphaAsm.c
- lines changed 1832, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- lines changed 1832, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- src/kehayden/linearSat/linearSat.c
- lines changed 1832, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- lines changed 11, context: html, text, full: html, text
Moving alphaAsm to linearSat, a better name.
- src/kehayden/linearSat/makefile
- lines changed 23, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- lines changed 5, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- src/kehayden/linearSat/yReads.txt
- lines changed 966, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- src/kehayden/linearSat/yTypeOrder.txt
- lines changed 34, context: html, text, full: html, text
Moving alphaAsm to linearSat, a bettern name.
- src/lib/obscure.c
- lines changed 16, context: html, text, full: html, text
Adding shuffle array of ints.
- src/lib/paraFetch.c
- lines changed 18, context: html, text, full: html, text
Adding paraFetchTempUpdateTime for tracking file progress.
- src/utils/sampleIndexes/makefile
- lines changed 3, context: html, text, full: html, text
Little utility seems to work.
- src/utils/sampleIndexes/sampleIndexes.c
- lines changed 53, context: html, text, full: html, text
Little utility seems to work.
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