Commits for kent
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v287_preview to v287_preview2 (2013-07-16 to 2013-07-23) v287
- Improving error handling in case where they have a persona account but are not on white list.
- src/hg/encode3/encodeDataWarehouse/edwWebCreateUser/edwWebCreateUser.c - lines changed 6, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwWebRegisterScript/edwWebRegisterScript.c - lines changed 12, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/inc/edwLib.h - lines changed 6, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/edwLib.c - lines changed 18, context: html, text, full: html, text
- Removing unused options bit of usage statement.
- src/hg/encode3/encodeDataWarehouse/edwMakeReplicateQa/edwMakeReplicateQa.c - lines changed 2, context: html, text, full: html, text
- Capitalizing HTTPS in usage message to help emphasize that http just won't do.
- src/hg/encode3/encodeDataWarehouse/edwScriptSubmit/edwScriptSubmit.c - lines changed 1, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwWebRegisterScript/edwWebRegisterScript.c - lines changed 1, context: html, text, full: html, text
- Seems to work.
- src/hg/encode3/encodeDataWarehouse/edwScriptSubmitStatus/edwScriptSubmitStatus.c - lines changed 166, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwScriptSubmitStatus/makefile - lines changed 16, context: html, text, full: html, text
- Making edwRunDaemon restart more gracefully with a well places sleep.
- src/hg/encode3/encodeDataWarehouse/edwRunDaemon/edwRunDaemon.c - lines changed 1, context: html, text, full: html, text
- Moving alphaAsm to linearSat, a bettern name.
- src/kehayden/alphaAsm/alphaAsm.c - lines changed 1832, context: html, text, full: html, text
- src/kehayden/alphaAsm/makefile - lines changed 23, context: html, text, full: html, text
- src/kehayden/alphaAsm/yReads.txt - lines changed 966, context: html, text, full: html, text
- src/kehayden/alphaAsm/yTypeOrder.txt - lines changed 34, context: html, text, full: html, text
- src/kehayden/linearSat/alphaAsm.c - lines changed 1832, context: html, text, full: html, text
- src/kehayden/linearSat/makefile - lines changed 23, context: html, text, full: html, text
- src/kehayden/linearSat/yReads.txt - lines changed 966, context: html, text, full: html, text
- src/kehayden/linearSat/yTypeOrder.txt - lines changed 34, context: html, text, full: html, text
- Moving alphaAsm to linearSat, a bettern name.
- src/kehayden/linearSat/alphaAsm.c - lines changed 1832, context: html, text, full: html, text
- src/kehayden/linearSat/linearSat.c - lines changed 1832, context: html, text, full: html, text
- src/kehayden/linearSat/makefile - lines changed 5, context: html, text, full: html, text
- Moving alphaAsm to linearSat, a better name.
- src/kehayden/linearSat/linearSat.c - lines changed 11, context: html, text, full: html, text
- Making it so that edwWebBrowse looks for modification time of file in transit before thinking things are stalled. Upping single file time out to 4 hours to accommodate big files from Barcelona.
- src/hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c - lines changed 12, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c - lines changed 38, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/edwLib.c - lines changed 65, context: html, text, full: html, text
- Making it so that edwWebBrowse looks for modification time of file in transit before thinking things are stalled. Upping single file time out to 4 hours to accommodate big files from Barcelona.
- src/hg/encode3/encodeDataWarehouse/inc/edwLib.h - lines changed 9, context: html, text, full: html, text
- Adding paraFetchTempUpdateTime for tracking file progress.
- More work to get rid of bogus stalled message.
- src/hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c - lines changed 6, context: html, text, full: html, text
- Moving password checking for script to library.
- src/hg/encode3/encodeDataWarehouse/edwScriptSubmit/edwScriptSubmit.c - lines changed 20, context: html, text, full: html, text
- Moving edwScriptRegistryFromCgi to library.
- src/hg/encode3/encodeDataWarehouse/edwScriptSubmitStatus/edwScriptSubmitStatus.c - lines changed 26, context: html, text, full: html, text
- Adding edwScriptSubmitStatus to makefile.
- src/hg/encode3/encodeDataWarehouse/makefile - lines changed 1, context: html, text, full: html, text
- Adding shuffle array of ints.
- Little utility seems to work.
- src/utils/sampleIndexes/makefile - lines changed 3, context: html, text, full: html, text
- src/utils/sampleIndexes/sampleIndexes.c - lines changed 53, context: html, text, full: html, text
- Utility to extract a bed subsample of a BAM seems to work.
- src/hg/encode3/encPipe/sampleBam/makefile - lines changed 3, context: html, text, full: html, text
- src/hg/encode3/encPipe/sampleBam/sampleBam.c - lines changed 105, context: html, text, full: html, text
- Actually setting random number seed.
- src/hg/encode3/encPipe/sampleBam/sampleBam.c - lines changed 1, context: html, text, full: html, text
- Making freen figure out encode validation key.
- src/hg/oneShot/freen/freen.c - lines changed 24, context: html, text, full: html, text
- Turning replacedBy column to a integer id rather than licensePlate, since the licensePlate really belongs to another table.
- src/hg/encode3/encodeDataWarehouse/inc/encodeDataWarehouse.h - lines changed 1, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.as - lines changed 1, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.c - lines changed 13, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.sql - lines changed 1, context: html, text, full: html, text
- Adding rcc and idat to supported formats.
- src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c - lines changed 2, context: html, text, full: html, text
- Adding cursory support (just magic number checking really) for idat and rcc files.
- src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c - lines changed 75, context: html, text, full: html, text
- Adding little script to copy to SDSC.
- src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/makk - lines changed 3, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwSubmit/makk - lines changed 3, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwWebBrowse/makk - lines changed 3, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwWebSubmit/makk - lines changed 3, context: html, text, full: html, text
- Fixing merge conflicts with Galt's SQL injection prevention stuff.
- src/hg/encode3/encodeDataWarehouse/edwMakeReplicateQa/edwMakeReplicateQa.c - lines changed 3, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwScriptSubmit/edwScriptSubmit.c - lines changed 24, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwWebRegisterScript/edwWebRegisterScript.c - lines changed 39, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/edwLib.c - lines changed 62, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.c - lines changed 34, context: html, text, full: html, text
- Fixing merge conflicts with Galt's SQL injection prevention stuff.
- src/hg/encode3/encodeDataWarehouse/lib/edwLib.c - lines changed 4, context: html, text, full: html, text
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