File Changes for angie

v288_preview2 to v288_base (2013-08-13 to 2013-08-19) v288

• src/hg/cartDump/cartDump.c
  • lines changed 1, context: html, text, full: html, text
    cartDump needs to call setUdcCacheDir() like the other CGIs; otherwise, when it opens the cart and fetches hubs, it uses the default /tmp/udcCache.
• src/hg/hgTracks/bamTrack.c
  • lines changed 4, context: html, text, full: html, text
    Code review feedback from Kate. refs #11525
• src/lib/annoStreamVcf.c
  • lines changed 46, context: html, text, full: html, text
    Fix for #11519: annoStreamVcf wasn't chr-ifying VCF seq names (whichcan be 1, 2, 3 instead of chr1, chr2, chr3) before comparing with the
    current region chrom (or minChrom).
    
• src/lib/twoBit.c
  • lines changed 8, context: html, text, full: html, text
    Speedup for twoBitIsSequence: look up name in tbf->hash instead of scanning indexList.