Commits for angie

v288_preview2 to v288_base (2013-08-13 to 2013-08-19) v288

• Speedup for twoBitIsSequence: look up name in tbf->hash instead of scanning indexList.
  • src/lib/twoBit.c - lines changed 8, context: html, text, full: html, text
• Fix for #11519: annoStreamVcf wasn't chr-ifying VCF seq names (whichcan be 1, 2, 3 instead of chr1, chr2, chr3) before comparing with the
  current region chrom (or minChrom).
  
  • src/lib/annoStreamVcf.c - lines changed 46, context: html, text, full: html, text
• Code review feedback from Kate. refs #11525
  • src/hg/hgTracks/bamTrack.c - lines changed 4, context: html, text, full: html, text
• cartDump needs to call setUdcCacheDir() like the other CGIs; otherwise, when it opens the cart and fetches hubs, it uses the default /tmp/udcCache.
  • src/hg/cartDump/cartDump.c - lines changed 1, context: html, text, full: html, text