Commits for braney
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v288_preview2 to v288_base (2013-08-13 to 2013-08-19) v288
- use hgwdev.sdsc.edu for euronode copy
- src/hg/makeDb/genbank/etc/euronode-copy - lines changed 1, context: html, text, full: html, text
- make HAL linked in by default, fix the problem with mismatched bases nothaving the right chars in them, start adding HAL to the table browser.
refs #10637
- src/hg/hgTables/hgTables.c - lines changed 4, context: html, text, full: html, text
- src/hg/hgTables/hgTables.h - lines changed 9, context: html, text, full: html, text
- src/hg/hgTables/joining.c - lines changed 12, context: html, text, full: html, text
- src/hg/hgTables/makefile - lines changed 1, context: html, text, full: html, text
- src/hg/hgTracks/snakeTrack.c - lines changed 12, context: html, text, full: html, text
- redid the refGene.exonAA file for the 46-way on hg19, also somealignments of killer whale for skunk project
- src/hg/makeDb/doc/hg19.txt - lines changed 68, context: html, text, full: html, text
- src/hg/utils/decipher/buildDecipher - lines changed 42, context: html, text, full: html, text
- src/hg/utils/decipher/checkDecipher.sh - lines changed 104, context: html, text, full: html, text
- src/hg/utils/decipher/decipher.tables - lines changed 4, context: html, text, full: html, text
- src/hg/utils/decipher/decipherWrapper.sh - lines changed 8, context: html, text, full: html, text
- src/hg/utils/decipher/validateDecipher.sh - lines changed 30, context: html, text, full: html, text
- src/hg/utils/gwas/checkGwas.sh - lines changed 76, context: html, text, full: html, text
- src/hg/utils/gwas/expectedColumns.txt - lines changed 34, context: html, text, full: html, text
- src/hg/utils/gwas/gwasWrapper.sh - lines changed 8, context: html, text, full: html, text
- src/hg/utils/gwas/makefile - lines changed 23, context: html, text, full: html, text
- src/hg/utils/gwas/perlParser.pl - lines changed 38, context: html, text, full: html, text
- src/hg/utils/gwas/validateGwas.sh - lines changed 30, context: html, text, full: html, text
- src/hg/utils/isca/buildISCA.csh - lines changed 55, context: html, text, full: html, text
- src/hg/utils/isca/checkISCA.sh - lines changed 72, context: html, text, full: html, text
- src/hg/utils/isca/isca.tables - lines changed 9, context: html, text, full: html, text
- src/hg/utils/isca/iscaWrapper.sh - lines changed 8, context: html, text, full: html, text
- src/hg/utils/isca/makefile - lines changed 20, context: html, text, full: html, text
- src/hg/utils/isca/validateISCA.sh - lines changed 35, context: html, text, full: html, text
- src/hg/utils/omim/buildOmimTracks.csh - lines changed 175, context: html, text, full: html, text
- src/hg/utils/omim/checkOmim.sh - lines changed 148, context: html, text, full: html, text
- src/hg/utils/omim/checkOmimUpload.sh - lines changed 80, context: html, text, full: html, text
- src/hg/utils/omim/doOmimAv/doOmimAv.c - lines changed 219, context: html, text, full: html, text
- src/hg/utils/omim/doOmimAv/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/omim/doOmimGene2/doOmimGene2.c - lines changed 98, context: html, text, full: html, text
- src/hg/utils/omim/doOmimGene2/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/omim/doOmimGeneSymbols/doOmimGeneSymbols.c - lines changed 81, context: html, text, full: html, text
- src/hg/utils/omim/doOmimGeneSymbols/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/omim/doOmimLocation/doOmimLocation.c - lines changed 311, context: html, text, full: html, text
- src/hg/utils/omim/doOmimLocation/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/omim/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/omim/omim.tables - lines changed 9, context: html, text, full: html, text
- src/hg/utils/omim/omimUploadWrapper.sh - lines changed 9, context: html, text, full: html, text
- src/hg/utils/omim/omimWrapper.sh - lines changed 8, context: html, text, full: html, text
- src/hg/utils/omim/parseGeneMap.pl - lines changed 221, context: html, text, full: html, text
- src/hg/utils/omim/validateOmim.sh - lines changed 35, context: html, text, full: html, text
- src/hg/utils/otto/decipher/buildDecipher - lines changed 42, context: html, text, full: html, text
- src/hg/utils/otto/decipher/checkDecipher.sh - lines changed 104, context: html, text, full: html, text
- src/hg/utils/otto/decipher/decipher.tables - lines changed 4, context: html, text, full: html, text
- src/hg/utils/otto/decipher/decipherWrapper.sh - lines changed 8, context: html, text, full: html, text
- src/hg/utils/otto/decipher/validateDecipher.sh - lines changed 30, context: html, text, full: html, text
- src/hg/utils/otto/gwas/checkGwas.sh - lines changed 76, context: html, text, full: html, text
- src/hg/utils/otto/gwas/expectedColumns.txt - lines changed 34, context: html, text, full: html, text
- src/hg/utils/otto/gwas/gwasWrapper.sh - lines changed 8, context: html, text, full: html, text
- src/hg/utils/otto/gwas/makefile - lines changed 23, context: html, text, full: html, text
- src/hg/utils/otto/gwas/perlParser.pl - lines changed 38, context: html, text, full: html, text
- src/hg/utils/otto/gwas/validateGwas.sh - lines changed 30, context: html, text, full: html, text
- src/hg/utils/otto/isca/buildISCA.csh - lines changed 55, context: html, text, full: html, text
- src/hg/utils/otto/isca/checkISCA.sh - lines changed 72, context: html, text, full: html, text
- src/hg/utils/otto/isca/isca.tables - lines changed 9, context: html, text, full: html, text
- src/hg/utils/otto/isca/iscaWrapper.sh - lines changed 8, context: html, text, full: html, text
- src/hg/utils/otto/isca/makefile - lines changed 20, context: html, text, full: html, text
- src/hg/utils/otto/isca/validateISCA.sh - lines changed 35, context: html, text, full: html, text
- src/hg/utils/otto/omim/buildOmimTracks.csh - lines changed 175, context: html, text, full: html, text
- src/hg/utils/otto/omim/checkOmim.sh - lines changed 148, context: html, text, full: html, text
- src/hg/utils/otto/omim/checkOmimUpload.sh - lines changed 80, context: html, text, full: html, text
- src/hg/utils/otto/omim/doOmimAv/doOmimAv.c - lines changed 219, context: html, text, full: html, text
- src/hg/utils/otto/omim/doOmimAv/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/otto/omim/doOmimGene2/doOmimGene2.c - lines changed 98, context: html, text, full: html, text
- src/hg/utils/otto/omim/doOmimGene2/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/otto/omim/doOmimGeneSymbols/doOmimGeneSymbols.c - lines changed 81, context: html, text, full: html, text
- src/hg/utils/otto/omim/doOmimGeneSymbols/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/otto/omim/doOmimLocation/doOmimLocation.c - lines changed 311, context: html, text, full: html, text
- src/hg/utils/otto/omim/doOmimLocation/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/otto/omim/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/otto/omim/omim.tables - lines changed 9, context: html, text, full: html, text
- src/hg/utils/otto/omim/omimUploadWrapper.sh - lines changed 9, context: html, text, full: html, text
- src/hg/utils/otto/omim/omimWrapper.sh - lines changed 8, context: html, text, full: html, text
- src/hg/utils/otto/omim/parseGeneMap.pl - lines changed 221, context: html, text, full: html, text
- src/hg/utils/otto/omim/validateOmim.sh - lines changed 35, context: html, text, full: html, text
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