Commits for hiram
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v288_preview to v288_preview2 (2013-08-07 to 2013-08-13) v288
- add note about MySQL access refs #9149
- fixup search rule for gold track refs #8750
- src/hg/makeDb/trackDb/gator/trackDb.ra - lines changed 5, context: html, text, full: html, text
- fixup search rule for the gold table refs #8750
- src/hg/makeDb/doc/allMis1.txt - lines changed 25, context: html, text, full: html, text
- fixup search rule refs #9693
- src/hg/makeDb/doc/echTel2.txt - lines changed 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tenrec/echTel2/trackDb.ra - lines changed 7, context: html, text, full: html, text
- fixup gold table search rule refs #9409
- src/hg/makeDb/doc/oviAri3.txt - lines changed 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/sheep/oviAri3/trackDb.ra - lines changed 6, context: html, text, full: html, text
- fixup search rule for gold table refs #10833
- src/hg/makeDb/doc/vicPac2.txt - lines changed 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/alpaca/vicPac2/trackDb.ra - lines changed 6, context: html, text, full: html, text
- fixup gold table search rule refs #6352
- src/hg/makeDb/doc/musFur1.txt - lines changed 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ferret/musFur1/trackDb.ra - lines changed 5, context: html, text, full: html, text
- add lastz swap documentation refs #10272
- src/hg/makeDb/doc/allMis1.txt - lines changed 24, context: html, text, full: html, text
- adding strCam1 Ostrich refs #10272
- src/hg/utils/phyloTrees/111way.commonNames.nh - lines changed 111, context: html, text, full: html, text
- src/hg/utils/phyloTrees/111way.nh - lines changed 111, context: html, text, full: html, text
- src/hg/utils/phyloTrees/111way.scientificNames.nh - lines changed 111, context: html, text, full: html, text
- src/hg/utils/phyloTrees/commonNames.sh - lines changed 1, context: html, text, full: html, text
- src/hg/utils/phyloTrees/makefile - lines changed 7, context: html, text, full: html, text
- src/hg/utils/phyloTrees/scientificNames.sh - lines changed 1, context: html, text, full: html, text
- rearrange tree to fix lizard turtle gators and birds from 111way.nh file refs #10272
- src/hg/utils/phyloTrees/benchMark100.commonNames.nh - lines changed 16, context: html, text, full: html, text
- src/hg/utils/phyloTrees/benchMark100.nh - lines changed 76, context: html, text, full: html, text
- src/hg/utils/phyloTrees/benchMark100.scientificNames.nh - lines changed 16, context: html, text, full: html, text
- src/hg/utils/phyloTrees/benchMark100.sh - lines changed 2, context: html, text, full: html, text
- rearrange tree to fix lizard turtle gators and birds from 111way.nh file refs #10272
- src/hg/utils/phyloTrees/benchMark100.sh - lines changed 2, context: html, text, full: html, text
- fixup to eliminate globals, passing data in tg structure refs #9741 #11384
- src/hg/hgTracks/joinedRmskTrack.c - lines changed 46, context: html, text, full: html, text
- fixup function declaration format to match kent style refs #11384
- src/hg/hgTracks/joinedRmskTrack.c - lines changed 31, context: html, text, full: html, text
- best use of slAddList refs #11384
- src/hg/hgTracks/joinedRmskTrack.c - lines changed 4, context: html, text, full: html, text
- no trix for kids refs #8132
- src/hg/makeDb/trackDb/makefile - lines changed 9, context: html, text, full: html, text
- source tree now functioning in new environment in hgwdev.sdsc refs #8875
- recognize host hgwdevSD refs #8875
- src/hg/utils/cpAndLinkToResourceFiles.pl - lines changed 1, context: html, text, full: html, text
- eliminate useless cd WEEKLY directory changes refs #8875
- src/utils/qa/weeklybld/makeUserApps.csh - lines changed 2, context: html, text, full: html, text
- eliminate useless cd WEEKLY directory changes refs #8875
- src/utils/qa/weeklybld/makeStrictBeta.csh - lines changed 1, context: html, text, full: html, text
- v288 preview2
- src/utils/qa/weeklybld/buildEnv.csh - lines changed 5, context: html, text, full: html, text
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