File Changes for hiram

v289_preview to v289_preview2 (2013-08-26 to 2013-09-02) v289

• src/hg/makeDb/doc/hg19.txt
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    done with lastz runs on turTru2 orcOrc1 lipVex1 apaSpi1 cheMyd1 micOch1 refs #10272
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    wrapping up lastz runs for xipMac1 lipVex1 apaSpi1 cheMyd1 refs #10272
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    starting xenTro7 susScr3 speTri2 refs #10272
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    done with lastz for lipVex1 cheMyd1 xipMac1 and starting oreNil2 refs @10272
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    swapping lastz for xenTro7 susScr3 speTri2 oreNil2 refs #10272
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    finished lastz for xenTro7 and oreNil2 starting lastz for gadMor1 chrPic1 myoLuc2 chiLan1 pelSin1 refs #10272
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    catching up some older recipBest and synNet lastz runs and finishing off ponAbe2 gorGor3 cerSim1 orcOrc1 micOch1 susScr3 speTri2 chrPic1 myoLuc2 chiLan1 pelSin1 refs #10272
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    starting lastz runs for criGri1 mesAur1 pteAle1 myoDav1 eptFus1 takFla1 refs #10272
• src/inc/common.mk
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    no librt on Mac OSX compile refs #11616
• src/utils/git-reports/git-reports.c
  • lines changed 11, context: html, text, full: html, text
    avoid problem of white space only diffs and missing zero length files refs #11571
• src/utils/qa/weeklybld/buildEnv.csh
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    v289 preview2
• src/utils/qa/weeklybld/buildHgCentralSql.csh
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    fixup for SDSC MySQL 5.6 differences in the mysql dump command refs #11576
• src/utils/qa/weeklybld/doNewReview.csh
  • lines changed 1, context: html, text, full: html, text
    adding steve to the mail list refs #11576
• src/utils/qa/weeklybld/downloadBuildSettings.mk
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    need to build download files with SSL on since the new MySQL requires that, sorry, refs #11576