Commits for hiram

v289_preview to v289_preview2 (2013-08-26 to 2013-09-02) v289

• avoid problem of white space only diffs and missing zero length files refs #11571
  • src/utils/git-reports/git-reports.c - lines changed 11, context: html, text, full: html, text
• fixup for SDSC MySQL 5.6 differences in the mysql dump command refs #11576
  • src/utils/qa/weeklybld/buildHgCentralSql.csh - lines changed 3, context: html, text, full: html, text
• adding steve to the mail list refs #11576
  • src/utils/qa/weeklybld/doNewReview.csh - lines changed 1, context: html, text, full: html, text
• need to build download files with SSL on since the new MySQL requires that, sorry, refs #11576
  • src/utils/qa/weeklybld/downloadBuildSettings.mk - lines changed 1, context: html, text, full: html, text
• done with lastz runs on turTru2 orcOrc1 lipVex1 apaSpi1 cheMyd1 micOch1 refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 206, context: html, text, full: html, text
• wrapping up lastz runs for xipMac1 lipVex1 apaSpi1 cheMyd1 refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 109, context: html, text, full: html, text
• starting xenTro7 susScr3 speTri2 refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 193, context: html, text, full: html, text
• done with lastz for lipVex1 cheMyd1 xipMac1 and starting oreNil2 refs @10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 85, context: html, text, full: html, text
• swapping lastz for xenTro7 susScr3 speTri2 oreNil2 refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 34, context: html, text, full: html, text
• finished lastz for xenTro7 and oreNil2 starting lastz for gadMor1 chrPic1 myoLuc2 chiLan1 pelSin1 refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 327, context: html, text, full: html, text
• catching up some older recipBest and synNet lastz runs and finishing off ponAbe2 gorGor3 cerSim1 orcOrc1 micOch1 susScr3 speTri2 chrPic1 myoLuc2 chiLan1 pelSin1 refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 70, context: html, text, full: html, text
• starting lastz runs for criGri1 mesAur1 pteAle1 myoDav1 eptFus1 takFla1 refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 372, context: html, text, full: html, text
• no librt on Mac OSX compile refs #11616
  • src/inc/common.mk - lines changed 6, context: html, text, full: html, text
• v289 preview2
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text