File Changes for steve

v290_preview2 to v290_base (2013-09-23 to 2013-09-30) v290

• src/hg/makeDb/schema/all.joiner
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    Excluded mm10 from knownGeneOld5Id since knownGene5 never existed on mm10
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    Adjusted ce2 threshold to fix joinerCheck error
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    Adjusted dm1 threshold to fix joinerCheck error
  • lines changed 1, context: html, text, full: html, text
    Adjusted dm2/dm3 threshold to fix joinerCheck error
  • lines changed 1, context: html, text, full: html, text
    Adjusted hg17 threshold to fix joinerCheck error
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    Adjusted hg18 threshold to fix joinerCheck error
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    Adjusted hg19 threshold to fix joinerCheck error
  • lines changed 2, context: html, text, full: html, text
    Added macEug1 to notEnsemblTranscriptId2 group to fix joinerCheck error
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    Added hg16,hg17,hg18,mm7,mm8 to ensGeneDb group to fix joinerCheck error
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    Added ce4 and hg19 to the notFlyBaseGeneId group; created new flyBase2004IdDmDb group and moved the list of databases from the appropriate line of the section into the group - added ce4 and hg19 to the group; created a minCheck value for flyBase2004IdDm.mmBlatTab.query
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    Added rn3 to ensGeneDb list
• src/utils/qa/2bitCompare
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    Made correction to variable name for output of file date,size for gbdb on beta (redmine #6508)
• src/utils/qa/getJoinerKeyErrors.pl
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    Updated environment statement