File Changes for hiram

v290_preview to v290_preview2 (2013-09-16 to 2013-09-23) v290

• src/hg/makeDb/doc/hg19.txt
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    panTig1 lastz done starting letCam1 lastz refs #10272
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    the 100-way procedure included refs #10272
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    swapping hg19 letCam1 lastz and constructing downloads for 100-way refs #10272
• src/hg/makeDb/doc/makeEnsembl.txt
  • lines changed 1276, context: html, text, full: html, text
    adding v73 build sequences refs #11675
• src/hg/makeDb/schema/all.joiner
  • lines changed 1, context: html, text, full: html, text
    avoid duplicate ensGene.name errors on gadMor1 refs #11675
• src/hg/makeDb/trackDb/human/hg19/cons100way.html
  • lines changed 108, context: html, text, full: html, text
    updated genome list for this set of 100 refs #10272
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    case and name updates updated refs #10272
• src/hg/utils/phyloTrees/benchMark100.commonNames.nh
  • lines changed 100, context: html, text, full: html, text
    updated distances from 4D measurement on the 100-way MAF files refs #10272
• src/hg/utils/phyloTrees/benchMark100.nh
  • lines changed 100, context: html, text, full: html, text
    updated distances from 4D measurement on the 100-way MAF files refs #10272
• src/hg/utils/phyloTrees/benchMark100.scientificNames.nh
  • lines changed 100, context: html, text, full: html, text
    updated distances from 4D measurement on the 100-way MAF files refs #10272
• src/hg/utils/phyloTrees/commonNames.sh
  • lines changed 12, context: html, text, full: html, text
    cleaning up the commonNames.sh name listing refs #10272
• src/hg/utils/phyloTrees/dbCommonScientificCladeOrderkey.tab
  • lines changed 115, context: html, text, full: html, text
    tab separated listing for dbDb entries refs #10272
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    correct clade from the clade table in hgcentral refs #10272
  • lines changed 4, context: html, text, full: html, text
    update case and naming consistency refs #10272
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    cleaning up the commonNames.sh name listing refs #10272
• src/utils/qa/weeklybld/buildEnv.csh
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    v290 preview2
• src/utils/raToStructGen/testOut/test.as
  • lines changed 1, context: html, text, full: html, text
    eliminate duplicate sql definition to src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.as refs #11756