Commits for hiram

v290_preview to v290_preview2 (2013-09-16 to 2013-09-23) v290

• eliminate duplicate sql definition to src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.as refs #11756
  • src/utils/raToStructGen/testOut/test.as - lines changed 1, context: html, text, full: html, text
• avoid duplicate ensGene.name errors on gadMor1 refs #11675
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• adding v73 build sequences refs #11675
  • src/hg/makeDb/doc/makeEnsembl.txt - lines changed 1276, context: html, text, full: html, text
• updated distances from 4D measurement on the 100-way MAF files refs #10272
  • src/hg/utils/phyloTrees/benchMark100.commonNames.nh - lines changed 100, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/benchMark100.nh - lines changed 100, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/benchMark100.scientificNames.nh - lines changed 100, context: html, text, full: html, text
• tab separated listing for dbDb entries refs #10272
  • src/hg/utils/phyloTrees/dbCommonScientificCladeOrderkey.tab - lines changed 115, context: html, text, full: html, text
• correct clade from the clade table in hgcentral refs #10272
  • src/hg/utils/phyloTrees/dbCommonScientificCladeOrderkey.tab - lines changed 113, context: html, text, full: html, text
• panTig1 lastz done starting letCam1 lastz refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 69, context: html, text, full: html, text
• updated genome list for this set of 100 refs #10272
  • src/hg/makeDb/trackDb/human/hg19/cons100way.html - lines changed 108, context: html, text, full: html, text
• case and name updates updated refs #10272
  • src/hg/makeDb/trackDb/human/hg19/cons100way.html - lines changed 4, context: html, text, full: html, text
• update case and naming consistency refs #10272
  • src/hg/utils/phyloTrees/dbCommonScientificCladeOrderkey.tab - lines changed 4, context: html, text, full: html, text
• the 100-way procedure included refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 1698, context: html, text, full: html, text
• swapping hg19 letCam1 lastz and constructing downloads for 100-way refs #10272
  • src/hg/makeDb/doc/hg19.txt - lines changed 134, context: html, text, full: html, text
• cleaning up the commonNames.sh name listing refs #10272
  • src/hg/utils/phyloTrees/commonNames.sh - lines changed 12, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/dbCommonScientificCladeOrderkey.tab - lines changed 3, context: html, text, full: html, text
• v290 preview2
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text