Commits for ann

v291_preview to v291_preview2 (2013-10-07 to 2013-10-14) v291

• adding a qascript-wide variable to these two qaConfig files for the location of the genank TABLE STATUS dump files. Sometimes they are located on rrnfs1 and sometimes on hgnfs1. This will keep it all in one place. I will also edit all of the qascript files that look for those dumpfiles to use this variable instead.
  • src/utils/qa/qaConfig.bash - lines changed 1, context: html, text, full: html, text
  • src/utils/qa/qaConfig.csh - lines changed 1, context: html, text, full: html, text
• I think this will work better with a quoted string
  • src/utils/qa/qaConfig.csh - lines changed 1, context: html, text, full: html, text
• replacing the hard-coded location of the genbank TABLE STATUS dump files to the global qaConfig-defined one. Sometimes they are on rrnfs1 and sometimes they are on hgnfs1
  • src/utils/qa/checkTableStatus.csh - lines changed 3, context: html, text, full: html, text
• removed 2 nonexistent rr machines
  • src/utils/qa/getRRdatabases.csh - lines changed 1, context: html, text, full: html, text
• switching hard-coded nfs1 fileserver name for qaConfig variable
  • src/utils/qa/getRRdatabases.csh - lines changed 1, context: html, text, full: html, text
• switching hard-coded nfs1 fileserver name for qaConfig variable
  • src/utils/qa/getRRdumpfile.csh - lines changed 4, context: html, text, full: html, text
• the quotes worked better for the csh version, so I'm hoping they do for the bash version as well
  • src/utils/qa/qaConfig.bash - lines changed 1, context: html, text, full: html, text
• removing this script. it is a holdout from when each rr node had its own MySQL server.
  • src/utils/qa/tableDumpDates.csh - lines changed 36, context: html, text, full: html, text
• removed tableDumpDates from the makefile since I removed the script from the repository
  • src/utils/qa/makefile - lines changed 1, context: html, text, full: html, text
• switching hard-coded nfs1 fileserver name for qaConfig variable
  • src/utils/qa/getRRtables.csh - lines changed 2, context: html, text, full: html, text
• switching hard-coded nfs1 fileserver name for qaConfig variable
  • src/utils/qa/getRRtableStatus.csh - lines changed 2, context: html, text, full: html, text