File Changes for kent

v291_base to v292_preview (2013-10-21 to 2013-10-28) v292

• src/hg/encode3/encPipe/sampleBam/sampleBam.c
  • lines changed 7, context: html, text, full: html, text
    Making it keep chromosome 1, and be much less likely to pick a non-aligning read for the sample.
• src/hg/encode3/encodeDataWarehouse/edwAddQaContamTarget/makk
  • lines changed 1, context: html, text, full: html, text
    Updating production executable location.
• src/hg/encode3/encodeDataWarehouse/edwCorrectFileTags/makk
  • lines changed 1, context: html, text, full: html, text
    Updating production executable location.
• src/hg/encode3/encodeDataWarehouse/edwMakeReplicateQa/edwMakeReplicateQa.c
  • lines changed 1, context: html, text, full: html, text
    Removing special treatment of replicate named 'both'
• src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/makk
  • lines changed 1, context: html, text, full: html, text
    Updating production executable location.
• src/hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c
  • lines changed 3, context: html, text, full: html, text
    Removing special treatment of replicate named 'both'
• src/hg/hgBlat/hgBlat.c
  • lines changed 1, context: html, text, full: html, text
    Making blat top out at 75k instead of 25k reads.
• src/inc/linefile.h
  • lines changed 4, context: html, text, full: html, text
    Adding lineFileNextRealWithSize.
• src/lib/linefile.c
  • lines changed 10, context: html, text, full: html, text
    Adding lineFileNextRealWithSize.
• src/utils/fastqStatsAndSubsample/fastqStatsAndSubsample.c
  • lines changed 3, context: html, text, full: html, text
    Making this tolerate new lines in fastq files between stanzas.