File Changes for kent

v293_preview to v293_preview2 (2013-11-18 to 2013-12-02) v293

• src/hg/encode3/encodeDataWarehouse/edwFixCshlSpikeins/edwFixCshlSpikeins.c
  • lines changed 77, context: html, text, full: html, text
    Program to rename submitFileName of spikins is done.
• src/hg/encode3/encodeDataWarehouse/edwFixCshlSpikeins/makefile
  • lines changed 4, context: html, text, full: html, text
    Program to rename submitFileName of spikins is done.
• src/hg/encode3/encodeDataWarehouse/edwFixGbb2/edwFixGbb2.c
  • lines changed 60, context: html, text, full: html, text
    Program to rerun conversion of gtf files to bigBed seems to work.
• src/hg/encode3/encodeDataWarehouse/edwFixGbb2/makefile
  • lines changed 4, context: html, text, full: html, text
    Program to rerun conversion of gtf files to bigBed seems to work.
• src/hg/encode3/encodeDataWarehouse/edwFixRenamed/edwFixRenamed.c
  • lines changed 101, context: html, text, full: html, text
    Program to cope with files renamed in ENCODE2 is functional.
• src/hg/encode3/encodeDataWarehouse/edwFixRenamed/makefile
  • lines changed 4, context: html, text, full: html, text
    Program to cope with files renamed in ENCODE2 is functional.
• src/hg/encode3/encodeDataWarehouse/edwFixReplaced/edwFixReplaced.c
  • lines changed 284, context: html, text, full: html, text
    Program that depricates replaced files in ENCODE2 and tries to connect them to their replacement seems to work. Was run at any rate.
• src/hg/encode3/encodeDataWarehouse/edwFixReplaced/makefile
  • lines changed 4, context: html, text, full: html, text
    Program that depricates replaced files in ENCODE2 and tries to connect them to their replacement seems to work. Was run at any rate.
• src/hg/encode3/encodeDataWarehouse/edwFixRevoked/edwFixRevoked.c
  • lines changed 90, context: html, text, full: html, text
    Program to help revoke files mistakenly imported into ENCODE3 seems to work.
• src/hg/encode3/importEncode2/encode2GffDoctor/encode2GffDoctor.c
  • lines changed 42, context: html, text, full: html, text
    Fixed doctor to add in dummy gene_id if not present since gffToBed requires this tag.
• src/hg/makefile
  • lines changed 1, context: html, text, full: html, text
    Program to help revoke files mistakenly imported into ENCODE3 seems to work.
• src/hg/oneShot/freen/freen.c
  • lines changed 15, context: html, text, full: html, text
    Program to help revoke files mistakenly imported into ENCODE3 seems to work.
• src/lib/gff.c
  • lines changed 1, context: html, text, full: html, text
    Program to help revoke files mistakenly imported into ENCODE3 seems to work.