Commits for kent
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v293_preview to v293_preview2 (2013-11-18 to 2013-12-02) v293
- Program to help revoke files mistakenly imported into ENCODE3 seems to work.
- src/hg/encode3/encodeDataWarehouse/edwFixRevoked/edwFixRevoked.c - lines changed 90, context: html, text, full: html, text
- src/hg/oneShot/freen/freen.c - lines changed 15, context: html, text, full: html, text
- Program to rerun conversion of gtf files to bigBed seems to work.
- src/hg/encode3/encodeDataWarehouse/edwFixGbb2/edwFixGbb2.c - lines changed 60, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwFixGbb2/makefile - lines changed 4, context: html, text, full: html, text
- Program to cope with files renamed in ENCODE2 is functional.
- src/hg/encode3/encodeDataWarehouse/edwFixRenamed/edwFixRenamed.c - lines changed 101, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwFixRenamed/makefile - lines changed 4, context: html, text, full: html, text
- Program to rename submitFileName of spikins is done.
- src/hg/encode3/encodeDataWarehouse/edwFixCshlSpikeins/edwFixCshlSpikeins.c - lines changed 77, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwFixCshlSpikeins/makefile - lines changed 4, context: html, text, full: html, text
- Program that depricates replaced files in ENCODE2 and tries to connect them to their replacement seems to work. Was run at any rate.
- src/hg/encode3/encodeDataWarehouse/edwFixReplaced/edwFixReplaced.c - lines changed 284, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwFixReplaced/makefile - lines changed 4, context: html, text, full: html, text
- Fixed doctor to add in dummy gene_id if not present since gffToBed requires this tag.
- src/hg/encode3/importEncode2/encode2GffDoctor/encode2GffDoctor.c - lines changed 42, context: html, text, full: html, text
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