Commits for angie

v294_preview2 to v294_base (2014-01-06 to 2014-01-13) v294

• Changing warn to errAbort as suggested by Jonathan (since that is more consistent with how bamFileAndIndexMustExist works).refs #12401
  
  • src/lib/bamFile.c - lines changed 1, context: html, text, full: html, text
• Tolerate missing '=' in metadata line for VCF3 because as Jonathan pointed out, the spec didn't demand key=val in 3.3.refs #12412
  
  • src/lib/vcf.c - lines changed 1, context: html, text, full: html, text
• Taking edwFinishAnalysis out of UTIL_DIRS if we're on a Mac because XCode doesn't come with -luuid;it has to be obtained separately by using homebrew or macports etc. Also, Jim confirms that Mac
  users are extremely unlikely to need encodeDataWarehouse programs.
  
  • src/hg/encode3/encodeDataWarehouse/makefile - lines changed 7, context: html, text, full: html, text
• Oops, as Jonathan pointed out, VCF 4.0 can still have meta-information lineswithout '='. fixes #12417
  
  • src/lib/vcf.c - lines changed 2, context: html, text, full: html, text