Commits for pauline

v294_preview2 to v294_base (2014-01-06 to 2014-01-13) v294

• Folding pubs track into combined phen+lit group. refs #12362
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 1, context: html, text, full: html, text
• Moved 5 repeats tracks to new repeats group. refs #12284
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 14, context: html, text, full: html, text
• Resetting priorities to move pubs to top and impose alpha order for rest of tracks. refs #12362
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 1, context: html, text, full: html, text
• Putting settings for new combined phen+lit group down at assembly level - see note 11 refs #12362
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text
• Starting loading of QTL tracks for 3 farm animals refs #10954
  • src/hg/makeDb/doc/bosTau7.txt - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/doc/galGal4.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/doc/susScr3.txt - lines changed 11, context: html, text, full: html, text
• Adding entry to make QTL track appear on chicken refs #10954
  • src/hg/makeDb/doc/galGal4.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 10, context: html, text, full: html, text
• Adding entry for liftover of temporary cytoband data from hg19.
  • src/hg/makeDb/doc/hg38.txt - lines changed 9, context: html, text, full: html, text
• Removing unneccesary lines. refs #12425
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 3, context: html, text, full: html, text
• Adding description page for QTL tracks. refs#10954
  • src/hg/makeDb/trackDb/animalQtl.html - lines changed 80, context: html, text, full: html, text
• Adding entries for animal QTL tracks. refs #10954
  • src/hg/makeDb/doc/bosTau7.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/galGal4.txt - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/doc/susScr3.txt - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal4/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau7/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pig/susScr3/trackDb.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text
• Updating coloring for animal QTL tracks, removing lines moved to lower level. refs #10954
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 3, context: html, text, full: html, text