File Changes for hiram

v293_base to v294_preview (2013-12-09 to 2013-12-16) v294

• src/hg/encode3/encodeDataWarehouse/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    correctly avoiding problems during parallel make and remove useless (sub shell) operations
• src/hg/encode3/encodeDataWarehouse/makefile
  • lines changed 20, context: html, text, full: html, text
    correctly avoiding problems during parallel make and remove useless (sub shell) operations
• src/hg/makeDb/doc/makeEnsembl.txt
  • lines changed 1313, context: html, text, full: html, text
    record procedures from v74 update refs #12288
• src/hg/makeDb/schema/all.joiner
  • lines changed 9, context: html, text, full: html, text
    clean up note/using messages for all ensGene v74 db releases refs #12288
  • lines changed 6, context: html, text, full: html, text
    clean up note/using messages for all ensGene v74 db releases refs #12288
• src/hg/utils/automation/findEnsFtpNames.sh
  • lines changed 5, context: html, text, full: html, text
    restore fetch of GTF and MySQL files refs #12288
• src/lib/axt.c
  • lines changed 77, context: html, text, full: html, text
    allow parsing of settings file from lastz_D tuning operations refs #12260
• src/lib/hmac.c
  • lines changed 2, context: html, text, full: html, text
    avoid compile errors when USE_SSL=0 refs #12254
• src/product/scripts/dirStatsFromFind.pl
  • lines changed 3, context: html, text, full: html, text
    better comments requested refs #12254
• src/product/scripts/trashCleanMonitor.sh
  • lines changed 5, context: html, text, full: html, text
    correctly setting the mail command refs #12254
• src/product/scripts/trashCleaner.bash
  • lines changed 5, context: html, text, full: html, text
    clarify usage message refs #12254
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v294 preview1 refs #12191
• src/utils/qa/weeklybld/buildOneUseCase
  • lines changed 3, context: html, text, full: html, text
    restore all use cases for daily build, they do work OK refs #12254
• src/utils/qa/weeklybld/buildWithUseCases
  • lines changed 11, context: html, text, full: html, text
    restore all use cases for daily build, they do work OK refs #12254
• src/utils/qa/weeklybld/doNewBranch.csh
  • lines changed 1, context: html, text, full: html, text
    add ann to Cc: line in Code review reminder email refs #12191